View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9968_low_6 (Length: 355)
Name: NF9968_low_6
Description: NF9968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9968_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 38279504 - 38279840
Alignment:
| Q |
1 |
ctaagtggattcttggtcaggatatgactgttgctgagtttcttgctgctgacatggacaataatggatttgtgaggtatggattaatatgttcccattg |
100 |
Q |
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| T |
38279504 |
ctaagtggattcttggtcaggatatgaccgttgctgagtttcttgctgctgacatggacaataatggatttgtgaggtatggattaatacgttcccattg |
38279603 |
T |
|
| Q |
101 |
cataaagtttaagttattttttataccaataatatgtttccattgcataaaggttaaattattttttatactaataaataaatgtttctgtctgtgaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38279604 |
cataaagtttaagttattttttataccaataatatgtttccattgcataaaggttaaattattttttataccaataaataaatgtttctgtctgtgaaag |
38279703 |
T |
|
| Q |
201 |
tagaacatgaaatatatactagttaggtattcaatatactttttcttttcgtaaccaacatgcttttcggactttattctgaagtatgaattttgtatct |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38279704 |
tagaacatgaaatatacactagttaggtattcaatatactttttcttttcgtaaccaacatgcttttcggactttattctgaagtgtgaattttgtatct |
38279803 |
T |
|
| Q |
301 |
gcacaactgcatacaaacattttcaatatactttaat |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38279804 |
gcacaactgcatacaaacattttcaatatactttaat |
38279840 |
T |
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