View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9969_2 (Length: 404)

Name: NF9969_2
Description: NF9969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9969_2
NF9969_2
[»] chr7 (5 HSPs)
chr7 (11-404)||(6969047-6969439)
chr7 (11-258)||(6921950-6922195)
chr7 (11-258)||(6956017-6956262)
chr7 (64-254)||(6958885-6959077)
chr7 (326-355)||(2754293-2754322)
[»] chr4 (1 HSPs)
chr4 (326-357)||(51238018-51238049)
[»] scaffold0576 (1 HSPs)
scaffold0576 (326-355)||(2214-2243)
[»] chr8 (1 HSPs)
chr8 (326-355)||(3731772-3731801)
[»] chr6 (1 HSPs)
chr6 (326-355)||(15357225-15357254)
[»] chr2 (1 HSPs)
chr2 (326-355)||(28655995-28656024)
[»] chr1 (2 HSPs)
chr1 (326-355)||(20262163-20262192)
chr1 (329-357)||(2445466-2445494)
[»] chr5 (1 HSPs)
chr5 (326-366)||(28735822-28735862)
[»] chr3 (1 HSPs)
chr3 (321-357)||(31652453-31652489)


Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 6969439 - 6969047
Alignment:
Q  11 aatgtgtgatgacttcaacttttggttttctttctaagattggggagcttaagaaactcgttgaagagggaaaaataaaatacattggtttgtctgaagc 110  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969439 aatgtgtgatgacttcaacttttggtttt-tttctaagattggggagcttaagaaactcgttgaagagggaaaaataaaatacattggtttgtctgaagc 6969341  T
Q  111 ctcagcttcaacaatcagaagagcacatgcagttcatccaataacagctgtgcaattggagtggtcactatggtcaagagatgttgaggaagaaataatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  6969340 ctcagcttcaacaatcagaagagcacatgcagttcatccaataacagctgtgcaattggagtggtcgctatggtcaagagatgtggaagaagaaataatt 6969241  T
Q  211 ccaacttgcaggtttgatttagtttacaaacattatgttatgttatctcgcatttctctttgtggtactttattaaaattgcaatgatacgaaggtataa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969240 ccaacttgcaggtttgatttagtttacaaacattatgttatgttatctcgcatttctctttgtggtactttattaaaattgcaatgatacgaaggtataa 6969141  T
Q  311 aacacgatagcgattataatttaagaaaatggaagtgattgaatgtacttacatgtattggtgacatatgtcgatgcaccaacacgtgtctgac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969140 aacacgatagcgattataatttaagaaaatggaagtgattgaatgtacttacatgtattggtgacatatgtcgatgcaccaacacgtgtctgac 6969047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 6922195 - 6921950
Alignment:
Q  11 aatgtgtgatgacttcaacttttggttttctttctaagattggggagcttaagaaactcgttgaagagggaaaaataaaatacattggtttgtctgaagc 110  Q
    |||||||| ||||||||||||  |||||||||| |||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  6922195 aatgtgtggtgacttcaactt--ggttttctttgtaagatcggagagcttaaaaaacttgttgaagagggaaaaataaaatacattggtttgtctgaggc 6922098  T
Q  111 ctcagcttcaacaatcagaagagcacatgcagttcatccaataacagctgtgcaattggagtggtcactatggtcaagagatgttgaggaagaaataatt 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  6922097 ctcagctgcaacaatcagaagagcacatgcagttcatccaataacagctgtgcagttggagtggtcactatggtcaagagatgtcgaggaagacataatt 6921998  T
Q  211 ccaacttgcaggtttgatttagtttacaaacattatgttatgttatct 258  Q
    |||||||||||||   ||||||||| |||||||| |||| ||||||||    
T  6921997 ccaacttgcaggtggaatttagtttgcaaacattgtgttttgttatct 6921950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 6956017 - 6956262
Alignment:
Q  11 aatgtgtgatgacttcaacttttggttttctttctaagattggggagcttaagaaactcgttgaagagggaaaaataaaatacattggtttgtctgaagc 110  Q
    |||||||| ||||||||||||  |||||||||| |||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  6956017 aatgtgtggtgacttcaactt--ggttttctttgtaagatcggagagcttaaaaaacttgttgaagagggaaaaataaaatacattggtttgtctgaggc 6956114  T
Q  111 ctcagcttcaacaatcagaagagcacatgcagttcatccaataacagctgtgcaattggagtggtcactatggtcaagagatgttgaggaagaaataatt 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  6956115 ctcagctgcaacaatcagaagagcacatgcagttcatccaataacagctgtgcagttggagtggtcactatggtcaagagatgtcgaggaagacataatt 6956214  T
Q  211 ccaacttgcaggtttgatttagtttacaaacattatgttatgttatct 258  Q
    |||||||||||||   ||||||||| |||||||| |||| ||||||||    
T  6956215 ccaacttgcaggtggaatttagtttgcaaacattgtgttttgttatct 6956262  T

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Target: chr7; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 64 - 254
Target Start/End: Original strand, 6958885 - 6959077
Alignment:
Q  64 aaactcgttgaagagggaaaaataaaatacattggtttgtctgaagcctcagcttcaacaatcagaagagcacatgcagttcatccaataacagctgtgc 163  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6958885 aaacttgttgaagagggcaaaataaaatacattggtttgtctgaagcctcagcttcaacaatcagaagagcacatgcagttcatccaataacagctgtgc 6958984  T
Q  164 aattggagtggtcactatggtcaagagatgttgaggaagaaataattccaacttgcaggtttg--atttagtttacaaacattatgttatgtt 254  Q
    | |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||  |||||||||||||| |||||||| ||||    
T  6958985 agttggagtggtcactgtggtcaagagatgttgaggaagacgtaattccaacttgcaggtgtgatatttagtttacaaatattatgttttgtt 6959077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 355
Target Start/End: Complemental strand, 2754322 - 2754293
Alignment:
Q  326 ataatttaagaaaatggaagtgattgaatg 355  Q
    ||||||||||||||||||||||||||||||    
T  2754322 ataatttaagaaaatggaagtgattgaatg 2754293  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 357
Target Start/End: Complemental strand, 51238049 - 51238018
Alignment:
Q  326 ataatttaagaaaatggaagtgattgaatgta 357  Q
    ||||||||||||||||||||||||||||||||    
T  51238049 ataatttaagaaaatggaagtgattgaatgta 51238018  T

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Target: scaffold0576 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 355
Target Start/End: Original strand, 2214 - 2243
Alignment:
Q  326 ataatttaagaaaatggaagtgattgaatg 355  Q
    ||||||||||||||||||||||||||||||    
T  2214 ataatttaagaaaatggaagtgattgaatg 2243  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 355
Target Start/End: Original strand, 3731772 - 3731801
Alignment:
Q  326 ataatttaagaaaatggaagtgattgaatg 355  Q
    ||||||||||||||||||||||||||||||    
T  3731772 ataatttaagaaaatggaagtgattgaatg 3731801  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 355
Target Start/End: Original strand, 15357225 - 15357254
Alignment:
Q  326 ataatttaagaaaatggaagtgattgaatg 355  Q
    ||||||||||||||||||||||||||||||    
T  15357225 ataatttaagaaaatggaagtgattgaatg 15357254  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 355
Target Start/End: Original strand, 28655995 - 28656024
Alignment:
Q  326 ataatttaagaaaatggaagtgattgaatg 355  Q
    ||||||||||||||||||||||||||||||    
T  28655995 ataatttaagaaaatggaagtgattgaatg 28656024  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 355
Target Start/End: Original strand, 20262163 - 20262192
Alignment:
Q  326 ataatttaagaaaatggaagtgattgaatg 355  Q
    ||||||||||||||||||||||||||||||    
T  20262163 ataatttaagaaaatggaagtgattgaatg 20262192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 357
Target Start/End: Complemental strand, 2445494 - 2445466
Alignment:
Q  329 atttaagaaaatggaagtgattgaatgta 357  Q
    |||||||||||||||||||||||||||||    
T  2445494 atttaagaaaatggaagtgattgaatgta 2445466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 28735862 - 28735822
Alignment:
Q  326 ataatttaagaaaatggaagtgattgaatgtacttacatgt 366  Q
    ||||||||||||||| |||||||||||||||| ||| ||||    
T  28735862 ataatttaagaaaatagaagtgattgaatgtaattatatgt 28735822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 31652453 - 31652489
Alignment:
Q  321 cgattataatttaagaaaatggaagtgattgaatgta 357  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  31652453 cgataataatttaagaaaatagaagtgattgaatgta 31652489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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