View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9970_high_1 (Length: 488)

Name: NF9970_high_1
Description: NF9970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9970_high_1
NF9970_high_1
[»] chr7 (15 HSPs)
chr7 (19-480)||(46120389-46120850)
chr7 (214-336)||(46120585-46120707)
chr7 (259-332)||(31685528-31685601)
chr7 (244-315)||(28954018-28954089)
chr7 (21-102)||(40799945-40800025)
chr7 (241-315)||(2894238-2894312)
chr7 (252-333)||(27045893-27045975)
chr7 (243-336)||(30224974-30225067)
chr7 (244-315)||(8566124-8566195)
chr7 (235-314)||(35436256-35436335)
chr7 (252-314)||(22618564-22618626)
chr7 (252-314)||(30869237-30869299)
chr7 (244-314)||(36245419-36245489)
chr7 (213-306)||(34877680-34877773)
chr7 (288-336)||(22779197-22779245)
[»] chr1 (18 HSPs)
chr1 (65-152)||(29523338-29523425)
chr1 (65-152)||(4471485-4471572)
chr1 (65-102)||(11066003-11066040)
chr1 (65-102)||(30685523-30685560)
chr1 (259-314)||(38737989-38738044)
chr1 (271-314)||(49944868-49944911)
chr1 (244-315)||(50105690-50105761)
chr1 (167-205)||(8231530-8231568)
chr1 (244-314)||(26070859-26070929)
chr1 (284-314)||(38067564-38067594)
chr1 (268-336)||(86858-86927)
chr1 (241-318)||(101507-101584)
chr1 (105-155)||(7375326-7375378)
chr1 (66-154)||(25009605-25009694)
chr1 (235-307)||(10357963-10358035)
chr1 (158-205)||(13579474-13579522)
chr1 (73-142)||(28411206-28411277)
chr1 (235-307)||(31978378-31978450)
[»] chr4 (14 HSPs)
chr4 (66-153)||(30105916-30106004)
chr4 (65-152)||(32979962-32980047)
chr4 (66-155)||(54710936-54711026)
chr4 (232-332)||(30206499-30206600)
chr4 (213-336)||(13412670-13412794)
chr4 (259-332)||(24235588-24235661)
chr4 (284-336)||(23292374-23292426)
chr4 (73-155)||(12241628-12241710)
chr4 (213-344)||(54569600-54569731)
chr4 (234-336)||(13412691-13412793)
chr4 (234-312)||(53787361-53787439)
chr4 (284-313)||(22235339-22235368)
chr4 (244-309)||(26066409-26066474)
chr4 (74-111)||(32880027-32880064)
[»] chr8 (12 HSPs)
chr8 (263-334)||(42627413-42627484)
chr8 (65-152)||(4529854-4529941)
chr8 (213-316)||(32549725-32549828)
chr8 (234-336)||(32549725-32549827)
chr8 (66-155)||(32414725-32414815)
chr8 (234-315)||(33059840-33059921)
chr8 (286-336)||(11865843-11865893)
chr8 (259-312)||(33057903-33057956)
chr8 (234-331)||(10107309-10107402)
chr8 (18-46)||(11168899-11168927)
chr8 (272-312)||(32272691-32272731)
chr8 (235-315)||(33058612-33058692)
[»] chr5 (11 HSPs)
chr5 (234-336)||(34255196-34255298)
chr5 (65-152)||(1969444-1969531)
chr5 (217-315)||(7212288-7212386)
chr5 (244-312)||(1950622-1950690)
chr5 (244-315)||(1950628-1950699)
chr5 (260-334)||(3715786-3715860)
chr5 (65-142)||(28798029-28798108)
chr5 (213-316)||(34255196-34255299)
chr5 (262-336)||(21022959-21023033)
chr5 (244-314)||(36434721-36434791)
chr5 (69-142)||(7144839-7144913)
[»] chr6 (5 HSPs)
chr6 (235-334)||(24265505-24265604)
chr6 (231-315)||(24265505-24265589)
chr6 (270-308)||(8920490-8920528)
chr6 (296-336)||(6087178-6087218)
chr6 (262-311)||(32432275-32432326)
[»] chr3 (21 HSPs)
chr3 (213-315)||(45410979-45411080)
chr3 (252-332)||(8036549-8036629)
chr3 (65-141)||(42939966-42940042)
chr3 (212-318)||(4980836-4980942)
chr3 (234-315)||(7138419-7138500)
chr3 (243-336)||(27460340-27460433)
chr3 (236-314)||(32711237-32711315)
chr3 (213-315)||(38074635-38074737)
chr3 (69-151)||(48169448-48169533)
chr3 (294-334)||(9010990-9011030)
chr3 (271-315)||(19996070-19996114)
chr3 (271-314)||(23223028-23223071)
chr3 (247-334)||(30672524-30672611)
chr3 (65-155)||(51058214-51058305)
chr3 (234-336)||(50970550-50970652)
chr3 (234-336)||(51073686-51073788)
chr3 (253-314)||(19674616-19674677)
chr3 (273-314)||(42896177-42896218)
chr3 (242-315)||(43448992-43449065)
chr3 (274-315)||(54470657-54470698)
chr3 (158-201)||(48169580-48169624)
[»] chr2 (14 HSPs)
chr2 (244-315)||(20555292-20555363)
chr2 (213-315)||(35241971-35242073)
chr2 (235-331)||(23471052-23471143)
chr2 (255-314)||(4860270-4860328)
chr2 (235-315)||(36452423-36452503)
chr2 (73-152)||(43472962-43473042)
chr2 (271-314)||(7943509-7943552)
chr2 (73-128)||(21424692-21424747)
chr2 (213-334)||(41190826-41190947)
chr2 (20-55)||(4536527-4536563)
chr2 (259-315)||(11532953-11533009)
chr2 (243-315)||(34447545-34447617)
chr2 (65-113)||(37724244-37724292)
chr2 (286-314)||(43679940-43679968)
[»] scaffold0128 (1 HSPs)
scaffold0128 (290-332)||(44137-44179)


Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 46120389 - 46120850
Alignment:
Q  19 catactccctccgtttcaaaatgagtgtactttagccnnnnnnnnnt-ttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatt 117  Q
    |||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46120389 catactccctccgtttcaaaatgagtgtactttagccaaaaaaaaaaattgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattatatt 46120488  T
Q  118 tttccaatagtacccctaattattactatgcacactacattattttagtaaagggtcatgtctttggacaacattattgcatttcttactcctgccacat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46120489 tttccaatagtacccctaattattactatgcacactacattattttagtaaagggtcatgtctttggacaacattattgcatttcttactcctgccacat 46120588  T
Q  218 ttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaaga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46120589 ttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaaga 46120688  T
Q  318 aatattggcttataaatgtaacaagagctgaaaaagaaatatctgcttataaatgtgacaaaagggagcatgtgtatagaaaccttaaaacgacactcac 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46120689 aatattggcttataaatgtaacaagagctgaaaaagaaatatctgcttataaatgtgacaaaagggagtatgtgtatagaaaccttaaaacgacactcac 46120788  T
Q  418 tttaaaacagagtgagtaataattaacacatgtcaaggtttttgtccgaccttcctctctgct 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46120789 tttaaaacagagtgagtaataattaacacatgtcaaggtttttgt-cgaccttcctctctgct 46120850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 336
Target Start/End: Complemental strand, 46120707 - 46120585
Alignment:
Q  214 acatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaa 313  Q
    |||||||||| | | ||||||||||| || ||||||  |||||| |||||||| || |||| |||| || |||||||| ||||||  |||||| || |||    
T  46120707 acatttataagccaatatttcttttttagattcattgaataactgatgtatcttgactataatataatccagatacattagttatgtaatgaacctgaaa 46120608  T
Q  314 aagaaatattggcttataaatgt 336  Q
    |||||||| | | ||||||||||    
T  46120607 aagaaataatcgtttataaatgt 46120585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 31685528 - 31685601
Alignment:
Q  259 atgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataa 332  Q
    |||||||||| ||||| ||||||||||||||||||| |||| ||||||||| || ||| ||| || ||||||||    
T  31685528 atgtatctggtttatagtatagtcaagatacatcagatattgaatgaatctgaacaaggaatctttgcttataa 31685601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 28954018 - 28954089
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||| |||||| |||||| ||||  |||||||| |  |||||||||||||||||||| |||||||||||    
T  28954018 ttcattaaataacttatgtatttggacaatattataattcagatacatcagttattcaataaatctaaaaaa 28954089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 40799945 - 40800025
Alignment:
Q  21 tactccctccgtttcaaaatgagtgt-actttagccnnnnnnnnntttgtttcaaaatgaacgtcattctcacttttcaatgt 102  Q
    |||||||||||||||||||||||||| ||||||||          |||||||||||||||| |||||||||||||||||||||    
T  40799945 tactccctccgtttcaaaatgagtgtcactttagc--aaaaataatttgtttcaaaatgaatgtcattctcacttttcaatgt 40800025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 2894312 - 2894238
Alignment:
Q  241 aggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    |||||||||| | |||||||||||||  | ||||||||||   |||| |||||||||||||||||||| ||||||    
T  2894312 aggttcattaaacaactaatgtatctaaagtatattatagaacagattcatcagttattcaatgaatccaaaaaa 2894238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 27045893 - 27045975
Alignment:
Q  252 ataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatct-aaaaaagaaatattggcttataaa 333  Q
    |||||| |||||||  ||| ||||||||||  |||||||| ||||||||||||||||| |||||| |||||||  ||||||||    
T  27045893 ataactgatgtatcaagataatattatagttcagatacataagttattcaatgaatctgaaaaaaaaaatattttcttataaa 27045975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 336
Target Start/End: Original strand, 30224974 - 30225067
Alignment:
Q  243 gttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaatgt 336  Q
    |||||||| ||| ||| |||||||||| |||| ||| ||  | |||||||||||||| |||||||||||||||   ||| | ||||||||||||    
T  30224974 gttcattaaatatctagtgtatctggactataatattgtacaaatacatcagttatttaatgaatctaaaaaatttatagttgcttataaatgt 30225067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 8566124 - 8566195
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    |||||| ||||| | |||||| |||  |||||| ||| |||||||||||| ||| |||||||||||||||||    
T  8566124 ttcattgcataaatgatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaaa 8566195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 35436256 - 35436335
Alignment:
Q  235 tttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    ||||| |||||||||  |||||| ||||||||||   ||||||||  | |||||||||| |||||||||||| |||||||    
T  35436256 ttttttaggttcattgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaacctaaaaa 35436335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 22618564 - 22618626
Alignment:
Q  252 ataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||| |||||| ||||||||||||||||| ||| |||| | ||||||| ||||||| ||||    
T  22618564 ataactgatgtatgtggattatattatagtctagaaacattaattattcagtgaatctgaaaa 22618626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 30869237 - 30869299
Alignment:
Q  252 ataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||| |||||||| |||  |||||| ||| |||||||||||| ||| ||||||||||||||||    
T  30869237 ataaataatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaa 30869299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 36245419 - 36245489
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||| ||||| | |||||| |||  |||||| ||| |||||||||||| ||| ||||||||||||||||    
T  36245419 ttcattgcataaatgatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaa 36245489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 34877680 - 34877773
Alignment:
Q  213 cacatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaa 306  Q
    ||||||||||| | | | || || ||| |||||||||| | || ||||||||||||| | |||||||||| |||| ||||| ||||| ||||||    
T  34877680 cacatttataagcaacttttgctcttttaggttcattaaacaattaatgtatctggaatgtattatagtctagatgcatcacttatttaatgaa 34877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 22779197 - 22779245
Alignment:
Q  288 acatcagttattcaatgaatctaaaaaagaaatattggcttataaatgt 336  Q
    |||||||||||| ||||||||| |||||| || ||| ||||||||||||    
T  22779197 acatcagttatttaatgaatctgaaaaaggaaaatttgcttataaatgt 22779245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 29523425 - 29523338
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccctaattattactatgcacac 152  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||||  ||||| ||||||||||| ||||||||| ||| |||||    
T  29523425 tttgtttcaaaatgaatgtcattctcacttttcaatgtactattaattactttttttcaatagtacccttaattattattatccacac 29523338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 4471572 - 4471485
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccctaattattactatgcacac 152  Q
    ||||||| ||||  || |||||||||||||||||||||  ||||  |||  ||||||||||||||||| ||||||||| ||| |||||    
T  4471572 tttgttttaaaaaaaatgtcattctcacttttcaatgtactattgcttacttttttccaatagtacccttaattattattatccacac 4471485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 11066003 - 11066040
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgt 102  Q
    |||||||||||||||| |||||||||||||||||||||    
T  11066003 tttgtttcaaaatgaatgtcattctcacttttcaatgt 11066040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 30685523 - 30685560
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgt 102  Q
    |||||||||||||||| |||||||||||||||||||||    
T  30685523 tttgtttcaaaatgaatgtcattctcacttttcaatgt 30685560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 38737989 - 38738044
Alignment:
Q  259 atgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||| ||| ||||||| ||| |||||||||||| ||| ||||||||||||||||    
T  38737989 atgtatttggtttatattctagacaagatacatcaattactcaatgaatctaaaaa 38738044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 49944911 - 49944868
Alignment:
Q  271 tatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||    
T  49944911 tatattctagacaagatacatcaattattcaatgaatctaaaaa 49944868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 50105761 - 50105690
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||| |||| |||||||||| | |||||||||||   ||||||||   |||||||||||||||||||||    
T  50105761 ttcattagataattaatgtatctagtttatattatagatcagatacattgattattcaatgaatctaaaaaa 50105690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 8231568 - 8231530
Alignment:
Q  167 aaagggtcatgtctttggacaacattattgcatttctta 205  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  8231568 aaagtgtcatgtctttggacaatattattgcatttctta 8231530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 26070929 - 26070859
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||| ||||| |||||||| |||  |||||| |||  ||||||||||| ||| ||||||||||||||||    
T  26070929 ttcattgcataaataatgtatttggtctatattctagataagatacatcaattactcaatgaatctaaaaa 26070859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 314
Target Start/End: Original strand, 38067564 - 38067594
Alignment:
Q  284 agatacatcagttattcaatgaatctaaaaa 314  Q
    |||||||||||||||||||||||||||||||    
T  38067564 agatacatcagttattcaatgaatctaaaaa 38067594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 336
Target Start/End: Complemental strand, 86927 - 86858
Alignment:
Q  268 gattatattatagtcaagatacatcagttattcaatgaatctaaa-aaagaaatattggcttataaatgt 336  Q
    ||||||||||||||| | ||| |||| ||||||||| |||||||| ||| |||||||  |||||||||||    
T  86927 gattatattatagtctaaatatatcatttattcaataaatctaaagaaaaaaatatttacttataaatgt 86858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 101584 - 101507
Alignment:
Q  241 aggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaa 318  Q
    |||||||||  |||| |||||||||||| ||| ||| ||  | |||||||| | |||||||||||| |||||||||||    
T  101584 aggttcattgaataattaatgtatctggtttacattgtaaaccagatacattaattattcaatgaacctaaaaaagaa 101507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 7375326 - 7375378
Alignment:
Q  105 tattaattaaatttttccaatagtacccc--taattattactatgcacactac 155  Q
    |||||||||  ||||||||||||||||||  ||||||||| ||||||||||||    
T  7375326 tattaattacttttttccaatagtacccccttaattattattatgcacactac 7375378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 25009605 - 25009694
Alignment:
Q  66 ttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaattt-ttccaatagtacccctaattattactatgcacacta 154  Q
    |||||| |||||||| || ||| |||||||| ||||| ||||| |||   ||| ||||||| ||| | ||||||||||||||||||||||    
T  25009605 ttgtttaaaaatgaatgtaattatcactttttaatgtagtattcattttttttcttccaatggtatcgctaattattactatgcacacta 25009694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 10357963 - 10358035
Alignment:
Q  235 tttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaat 307  Q
    |||||||| ||||| | |||| | ||||||||||| ||||||||| || |||| ||| ||||||| |||||||    
T  10357963 tttttcagattcataaaataattgatgtatctggactatattataatctagattcataagttatttaatgaat 10358035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 13579522 - 13579474
Alignment:
Q  158 tattttagtaaagg-gtcatgtctttggacaacattattgcatttctta 205  Q
    |||||||||||| | ||| |||||||||||||||||||| |||||||||    
T  13579522 tattttagtaaaagtgtcctgtctttggacaacattattacatttctta 13579474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 28411277 - 28411206
Alignment:
Q  73 aaaatgaacgtcattctcacttttcaatgtggtattaatt--aaatttttccaatagtacccctaattatta 142  Q
    |||||||| |||||||||||||||||||||  || |||||     ||||||||||||||||| |||||||||    
T  28411277 aaaatgaatgtcattctcacttttcaatgtaatagtaattgcttttttttccaatagtacccttaattatta 28411206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 31978450 - 31978378
Alignment:
Q  235 tttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaat 307  Q
    ||||| |||||||||| | |||| ||||||||||| | |||||||||  |||||||| | ||||| |||||||    
T  31978450 ttttttaggttcattaaacaactgatgtatctggaatgtattatagttcagatacataatttatttaatgaat 31978378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 30105916 - 30106004
Alignment:
Q  66 ttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagta-cccctaattattactatgcacact 153  Q
    ||||||||||||||| | ||||||||||||||||| |  |||||||||| ||||||||| |||| |||||||||||||||||| |||||    
T  30105916 ttgtttcaaaatgaatggcattctcacttttcaatttactattaattaactttttccaacagtaccccctaattattactatgtacact 30106004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 32980047 - 32979962
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccctaattattactatgcacac 152  Q
    |||||||||||||||| |||||||||||||||||  ||  |||||||||  ||||||||||||||||| ||||||||| |||||||||    
T  32980047 tttgtttcaaaatgaatgtcattctcacttttca--gtactattaattacttttttccaatagtacccttaattattattatgcacac 32979962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 54711026 - 54710936
Alignment:
Q  66 ttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccc-taattattactatgcacactac 155  Q
    ||||||||||||||| |||||||||||||||||| |   ||||||||| ||||| | |||| |||||| ||||||||||||||||||||||    
T  54711026 ttgtttcaaaatgaatgtcattctcacttttcaacgcactattaattacattttccaaatactaccccttaattattactatgcacactac 54710936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 332
Target Start/End: Original strand, 30206499 - 30206600
Alignment:
Q  232 ttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatct-aaaaaagaaatattggcttat 330  Q
    ||||||||||||||| ||| ||||| ||||||| |||  |||||||||  | |||||||||| ||||||||||||||| ||||||| |||||| | ||||    
T  30206499 ttctttttcaggttcgttaaataaccaatgtatttggtctatattataaaccagatacatcaattattcaatgaatctgaaaaaaggaatatttgtttat 30206598  T
Q  331 aa 332  Q
    ||    
T  30206599 aa 30206600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 336
Target Start/End: Complemental strand, 13412794 - 13412670
Alignment:
Q  213 cacatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||||||| | | | || |||||||| |||||||| |||||| ||||||||||   |||||||| |  |||| ||||||||||| ||||||||| ||    
T  13412794 cacatttataagcaacttttgctttttcatgttcattaaataactgatgtatctgggcaatattataattcagatgcatcagttatttaatgaatctgaa 13412695  T
Q  313 aaag-aaatattggcttataaatgt 336  Q
    |||| |||| || ||||||||||||    
T  13412694 aaagcaaatgttagcttataaatgt 13412670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 24235661 - 24235588
Alignment:
Q  259 atgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataa 332  Q
    |||||| |||||| || ||||||| | |||||||||||||||||||||||| |||||  |||||| ||||||||    
T  24235661 atgtatatggattgtagtatagtctaaatacatcagttattcaatgaatctgaaaaaataatatttgcttataa 24235588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 23292426 - 23292374
Alignment:
Q  284 agatacatcagttattcaatgaatctaaaaaagaaatattggcttataaatgt 336  Q
    ||||||||||| |||||||||||||| |||||| |||||| ||||||||||||    
T  23292426 agatacatcagatattcaatgaatctgaaaaaggaatatttgcttataaatgt 23292374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 12241710 - 12241628
Alignment:
Q  73 aaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccc-taattattactatgcacactac 155  Q
    |||||||| |||||||||||||||||| |   |||||||||  |||| ||||||||||||| ||||||||| ||||||||||||    
T  12241710 aaaatgaatgtcattctcacttttcaa-gcactattaattaccttttcccaatagtaccccttaattattattatgcacactac 12241628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 344
Target Start/End: Original strand, 54569600 - 54569731
Alignment:
Q  213 cacatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||||||| | | | || ||||| ||||||||||| |||| ||||||||||    |||| ||||||| |||||||||| |||||  |||||||| ||    
T  54569600 cacatttataagcaacttttgcttttgcaggttcattaaataattaatgtatctaagatataatatagtctagatacatcacttatttcatgaatctgaa 54569699  T
Q  313 aaagaaatattggcttataaatgtaacaagag 344  Q
    |||| || | | |||||||||| |||| ||||    
T  54569700 aaagtaaaagttgcttataaatataaccagag 54569731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 336
Target Start/End: Original strand, 13412691 - 13412793
Alignment:
Q  234 ctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaa 333  Q
    ||||||||| ||||||| |||||| ||| ||||| |||||| ||| | | |||||||||||||||| ||||||  | |||||| || | | |||||||||    
T  13412691 ctttttcagattcattaaataactgatgcatctgaattataatattgcccagatacatcagttatttaatgaacatgaaaaagcaaaagttgcttataaa 13412790  T
Q  334 tgt 336  Q
    |||    
T  13412791 tgt 13412793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 53787361 - 53787439
Alignment:
Q  234 ctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||||  ||||||| ||||   |||||||| ||||||| ||||||| | |||||||||||||| ||| ||||||||    
T  53787361 ctttttcatattcattaaataatgtatgtatcttgattataatatagtctaaatacatcagttatttaataaatctaaa 53787439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 22235339 - 22235368
Alignment:
Q  284 agatacatcagttattcaatgaatctaaaa 313  Q
    ||||||||||||||||||||||||||||||    
T  22235339 agatacatcagttattcaatgaatctaaaa 22235368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 26066474 - 26066409
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatct 309  Q
    ||||||| |||||| ||||||||||  |||||| ||| |  ||||||||| |||||||||||||||    
T  26066474 ttcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaatgaatct 26066409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 32880064 - 32880027
Alignment:
Q  74 aaatgaacgtcattctcacttttcaatgtggtattaat 111  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  32880064 aaatgaacgtcattctcacttttcaatgcagtattaat 32880027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 42627413 - 42627484
Alignment:
Q  263 atctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaat 334  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| || |||||| |||||| ||||||||||    
T  42627413 atctggactatattatagtcaagatacatcggttattcaatgaacctgaaaaaggaatatttgcttataaat 42627484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 4529854 - 4529941
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccctaattattactatgcacac 152  Q
    ||||||| |||||||| |||||||||||||||||||||  |||||||||  ||||| |||||| |||| ||||||||| ||| |||||    
T  4529854 tttgttttaaaatgaatgtcattctcacttttcaatgtactattaattactttttttcaataggacccttaattattattatccacac 4529941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 32549828 - 32549725
Alignment:
Q  213 cacatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||||||| | | | || |||||| || ||||||| ||||   ||||||||||| ||||||||| || |||||||||||||||| ||||||||||||    
T  32549828 cacatttataagcaacttttgctttttgagattcattaaataaacgatgtatctggactatattatattccagatacatcagttatttaatgaatctaaa 32549729  T
Q  313 aaag 316  Q
    ||||    
T  32549728 aaag 32549725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 336
Target Start/End: Original strand, 32549725 - 32549827
Alignment:
Q  234 ctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaa 333  Q
    |||||| || ||||||| |||||| ||||||||||| |||| ||||||| |||||||||  ||||| ||||||||| |||||| || | | |||||||||    
T  32549725 cttttttagattcattaaataactgatgtatctggaatataatatagtccagatacatcgtttatttaatgaatctcaaaaagcaaaagttgcttataaa 32549824  T
Q  334 tgt 336  Q
    |||    
T  32549825 tgt 32549827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 32414725 - 32414815
Alignment:
Q  66 ttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccct-aattattactatgcacactac 155  Q
    ||||||||||||||| |||||| | | ||| |||||   |||||||||  |||| ||||||||||| || |||||||||||||||||||||    
T  32414725 ttgtttcaaaatgaatgtcatttttagtttccaatgcactattaattactttttcccaatagtacctctaaattattactatgcacactac 32414815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 33059840 - 33059921
Alignment:
Q  234 ctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||||| ||||||| |||| | ||||||||||| ||||||||| |  |||| ||||| ||||| ||| |||||||||||    
T  33059840 ctttttcagattcattaaataattgatgtatctggactatattataattcagatgcatcaattatttaataaatctaaaaaa 33059921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 11865843 - 11865893
Alignment:
Q  286 atacatcagttattcaatgaatctaaaaaagaaatattggcttataaatgt 336  Q
    |||||||||||  | ||||||||| ||||||||||| ||||||||||||||    
T  11865843 atacatcagttgcttaatgaatctgaaaaagaaatagtggcttataaatgt 11865893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 33057956 - 33057903
Alignment:
Q  259 atgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||||| |||||| ||||||| | |||||||| ||||| ||||||||||||    
T  33057956 atgtatctgaattataatatagtccaaatacatcaattatttaatgaatctaaa 33057903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 10107309 - 10107402
Alignment:
Q  234 ctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttata 331  Q
    ||||||||| ||||||  |||| |||||||| |||    || ||||| | ||||||||||||||||||||||| || |||||  |||||| |||||||    
T  10107309 ctttttcagattcattgaataattaatgtatatgg----taatatagaccagatacatcagttattcaatgaaactgaaaaaagaatatttgcttata 10107402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 11168927 - 11168899
Alignment:
Q  18 acatactccctccgtttcaaaatgagtgt 46  Q
    |||||||||||||||||||||||||||||    
T  11168927 acatactccctccgtttcaaaatgagtgt 11168899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 32272691 - 32272731
Alignment:
Q  272 atattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||||| | |||||||||| ||||||||||||||||||    
T  32272691 atattatagacgagatacatcatttattcaatgaatctaaa 32272731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 33058612 - 33058692
Alignment:
Q  235 tttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    |||||||| ||||||| |||| | ||||||||| | ||||||||| |  |||| ||||| ||||| ||| |||||||||||    
T  33058612 tttttcagattcattaaataattgatgtatctgaactatattataattcagatgcatcaattatttaataaatctaaaaaa 33058692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 336
Target Start/End: Original strand, 34255196 - 34255298
Alignment:
Q  234 ctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaa 333  Q
    |||||| |||||||||| || ||| || |||||||| |||| ||||||| |||||||||| ||||| |||||||||||||||| || | | |||||||||    
T  34255196 cttttttaggttcattaaatcactgatatatctggaatataatatagtctagatacatcacttatttaatgaatctaaaaaagtaaaagttgcttataaa 34255295  T
Q  334 tgt 336  Q
    |||    
T  34255296 tgt 34255298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 1969531 - 1969444
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccctaattattactatgcacac 152  Q
    |||||||||||||||  |||||| |  |||||||||||  |||||||||  ||||||||||||||||| ||||||||| ||| |||||    
T  1969531 tttgtttcaaaatgagtgtcattttggcttttcaatgtactattaattacttttttccaatagtacccttaattattattattcacac 1969444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 7212288 - 7212386
Alignment:
Q  217 tttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||| | ||| || ||||||||| ||||||| |||| | |||||||| |||||||||||  |  |||||||||| ||||| |||||||||||||||    
T  7212288 tttataagcaatttttcctttttcagattcattaaataagtgatgtatctagattatattatgttttagatacatcaattatttaatgaatctaaaaaa 7212386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 1950690 - 1950622
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||| |||||| ||||||||  |||||| ||||||| | |||||||||||||| ||||||||||||    
T  1950690 ttcattaaataactgatgtatctctattataatatagtccaaatacatcagttatttaatgaatctaaa 1950622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 1950628 - 1950699
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||| |||||| |||||| |||| ||||||||| |  |||||||||||||||| ||||||| |||||||    
T  1950628 ttcattaaataactgatgtatttggactatattataatagagatacatcagttatttaatgaatttaaaaaa 1950699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 3715786 - 3715860
Alignment:
Q  260 tgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaat 334  Q
    ||||| ||||||||||||||||  ||||||||||  |||| ||| |||||||||||| || ||| ||||||||||    
T  3715786 tgtatatggattatattatagttgagatacatcaactattgaataaatctaaaaaagtaaaatttgcttataaat 3715860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 28798029 - 28798108
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaatta--aatttttccaatagtacccctaattatta 142  Q
    |||||||||||||||| ||| ||||||||||||||| |  |||||||||    ||||| ||||||||||| |||||||||    
T  28798029 tttgtttcaaaatgaatgtcgttctcacttttcaatatactattaattactttttttttcaatagtacccttaattatta 28798108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 34255299 - 34255196
Alignment:
Q  213 cacatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||||||| | | | || |||||| || ||||||| |||| | |||||||| || ||||||||| || ||||| |||||| ||| |||||| |||||    
T  34255299 cacatttataagcaacttttacttttttagattcattaaataagtgatgtatctagactatattatattccagatatatcagtgatttaatgaacctaaa 34255200  T
Q  313 aaag 316  Q
    ||||    
T  34255199 aaag 34255196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 21022959 - 21023033
Alignment:
Q  262 tatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaatgt 336  Q
    |||||||| ||||| |||||  | ||||||||  ||||||||||||||||||||  || ||| ||||||||||||    
T  21022959 tatctggactatatcatagttcaaatacatcaactattcaatgaatctaaaaaaataaaatttgcttataaatgt 21023033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 36434721 - 36434791
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||||||||| | || ||| ||| ||||||| ||| |||||||||||| ||| | ||||||||||||||    
T  36434721 ttcattacataaatgatatatttggtttatattttagacaagatacatcaattacttaatgaatctaaaaa 36434791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 7144839 - 7144913
Alignment:
Q  69 tttcaaaatgaacgtcattctcacttttcaatgtggtattaatta--aatttttccaatagtacccctaattatta 142  Q
    ||||||||||||  ||||||||||||||||||||  |||||||||    |||||||||||||| || |||||||||    
T  7144839 tttcaaaatgaatatcattctcacttttcaatgt-ctattaattacttttttttccaatagtatccttaattatta 7144913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 24265505 - 24265604
Alignment:
Q  235 tttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaat 334  Q
    |||||||| ||||||| |||||| |||||| |||| ||||||||| |  |||||||||| ||||| ||| ||||||||||||||| | | ||||||||||    
T  24265505 tttttcagattcattaaataactgatgtatatggactatattataattcagatacatcaattatttaataaatctaaaaaagaaaaagttgcttataaat 24265604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 24265589 - 24265505
Alignment:
Q  231 tttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||||| || || |||| |||| | ||||||||| |||||| ||||||| | |||||||||||||| ||||||||| |||||    
T  24265589 tttcttttttagatttattaaataattgatgtatctgaattataatatagtccatatacatcagttatttaatgaatctgaaaaa 24265505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 8920528 - 8920490
Alignment:
Q  270 ttatattatagtcaagatacatcagttattcaatgaatc 308  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  8920528 ttataatatagtcaaggtacatcagttattcaatgaatc 8920490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 6087218 - 6087178
Alignment:
Q  296 tattcaatgaatctaaaaaagaaatattggcttataaatgt 336  Q
    |||||||||||||||||||||||||| | | ||||||||||    
T  6087218 tattcaatgaatctaaaaaagaaatagttgtttataaatgt 6087178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 32432275 - 32432326
Alignment:
Q  262 tatctggattatattatag--tcaagatacatcagttattcaatgaatctaa 311  Q
    |||||||| |||||||||   ||||||||||||||||||| |||||||||||    
T  32432275 tatctggactatattatataatcaagatacatcagttatttaatgaatctaa 32432326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 45411080 - 45410979
Alignment:
Q  213 cacatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||||||||  | |||||| |||| || ||||||| |||||| ||||||| |||| ||||||||||| ||||| ||||||||||||| |||||| ||    
T  45411080 cacatttataaataactatttcctttt-agattcattaaataactgatgtatcgggataatattatagtccagatatatcagttattcaacgaatctgaa 45410982  T
Q  313 aaa 315  Q
    |||    
T  45410981 aaa 45410979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 8036629 - 8036549
Alignment:
Q  252 ataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataa 332  Q
    ||||||| | |||||||| |||||||||  | | ||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  8036629 ataactagtttatctggactatattataaactaaatacatcagttattcaatgaacctaaaaaataaatatttgcttataa 8036549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 42939966 - 42940042
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccctaattatt 141  Q
    |||||||||||||||| |||||| ||| |||||||||   |||||||||  ||||||||||||||||| ||||||||    
T  42939966 tttgtttcaaaatgaatgtcattttcatttttcaatgcactattaattacttttttccaatagtacccttaattatt 42940042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 4980942 - 4980836
Alignment:
Q  212 ccacatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaa 311  Q
    |||| ||||||||| | | || ||||||||  ||||||| |||| | ||||||||  | | ||||||||||||||||||||| ||||||||| ||||| |    
T  4980942 ccacgtttataaacaacttttactttttcaaattcattaaataatttatgtatctaaactttattatagtcaagatacatcaattattcaattaatctga 4980843  T
Q  312 aaaagaa 318  Q
    |||||||    
T  4980842 aaaagaa 4980836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 7138419 - 7138500
Alignment:
Q  234 ctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||||  ||||||| |||||  |||||||| ||||||| ||||||| | |||||||||||||| ||||||||| |||||    
T  7138419 ctttttcaaattcattaaataaccgatgtatctcgattataatatagtctaaatacatcagttatttaatgaatctgaaaaa 7138500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 27460433 - 27460340
Alignment:
Q  243 gttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaatgt 336  Q
    |||||||| |||||| || |||||||| | |||||||||| | |||| | |||||||||||||| |||  ||| ||||||| ||||||||||||    
T  27460433 gttcattaaataactgatatatctggactgtattatagtccaaatacgtaagttattcaatgaacctagcaaaaaaatatttgcttataaatgt 27460340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 32711237 - 32711315
Alignment:
Q  236 ttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||| |||||||||  |||| | |||||| |||  |||||||||| | |||||||||| ||||||||||||||||||||    
T  32711237 tttttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaa 32711315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 38074737 - 38074635
Alignment:
Q  213 cacatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||||||||||| | | |||| ||||||| ||||||| |||||| ||||||||  |||||| ||||||  | |||||||| ||||| |||  |||||||    
T  38074737 cacatttataaacaactttttcattttcagattcattaaataacttatgtatctaaattataatatagttcaaatacatcaattatttaatatatctaaa 38074638  T
Q  313 aaa 315  Q
    |||    
T  38074637 aaa 38074635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 48169448 - 48169533
Alignment:
Q  69 tttcaaaatgaacgtcattctcacttttcaatgtggtattaatt--aaatttttccaatagtacccct-aattattactatgcaca 151  Q
    |||||||||||| |||||| ||||||||||||||  ||||||||  | |||||| ||||||||| | | |||||||||||||||||    
T  48169448 tttcaaaatgaatgtcattttcacttttcaatgtactattaattacatatttttacaatagtactcttaaattattactatgcaca 48169533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 9010990 - 9011030
Alignment:
Q  294 gttattcaatgaatctaaaaaagaaatattggcttataaat 334  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  9010990 gttattcaatgaatctgaaaaagaaatatttgcttataaat 9011030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 19996114 - 19996070
Alignment:
Q  271 tatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||||| || |||||||||| |||||||||||||||||||||    
T  19996114 tatattataatctagatacatcaattattcaatgaatctaaaaaa 19996070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 23223028 - 23223071
Alignment:
Q  271 tatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||    
T  23223028 tatattttagacaagatacatcagttactcaatgaatctaaaaa 23223071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 334
Target Start/End: Complemental strand, 30672611 - 30672524
Alignment:
Q  247 attacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaat 334  Q
    |||| |||||| || ||| |||| ||||||||| |  |||||||||| ||||| |||||||||||||| | || ||| ||||||||||    
T  30672611 attaaataactgatatatttggactatattataattcagatacatcaattatttaatgaatctaaaaatggaaaatttgcttataaat 30672524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 51058305 - 51058214
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagtacccct-aattattactatgcacactac 155  Q
    ||||||| |||||||| |||| | | | |||||||||   | |||||||  ||||||||||||| ||||| |||||||||||||||||||||    
T  51058305 tttgttttaaaatgaatgtcactttaagttttcaatgcacttttaattacttttttccaatagttccccttaattattactatgcacactac 51058214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 50970652 - 50970550
Alignment:
Q  234 ctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaa 333  Q
    ||||||||| ||||||| |||| | ||||||||  | | ||||||||| | | || |||| ||||||||||||||| |||||| |||||| ||| | |||    
T  50970652 ctttttcagattcattaaataattgatgtatctaaactttattatagttagggtagatcaattattcaatgaatctgaaaaaggaatatttgctcacaaa 50970553  T
Q  334 tgt 336  Q
    |||    
T  50970552 tgt 50970550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 51073788 - 51073686
Alignment:
Q  234 ctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttataaa 333  Q
    ||||||||| ||||||| |||| | ||||||||  | | ||||||||| | | || |||| ||||||||||||||| |||||| |||||| ||| | |||    
T  51073788 ctttttcagattcattaaataattgatgtatctaaactttattatagttagggtagatcaattattcaatgaatctgaaaaaggaatatttgctcacaaa 51073689  T
Q  334 tgt 336  Q
    |||    
T  51073688 tgt 51073686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 19674677 - 19674616
Alignment:
Q  253 taactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    ||||| |||||||||| ||||||||||| | | ||||| || |||||||||||| |||||||    
T  19674677 taactgatgtatctgggttatattatagaccaaatacaacaattattcaatgaacctaaaaa 19674616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 42896218 - 42896177
Alignment:
Q  273 tattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||||| | ||||||||||||||||||||||| |||||||    
T  42896218 tattatagaccagatacatcagttattcaatgaacctaaaaa 42896177  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 43449065 - 43448992
Alignment:
Q  242 ggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||||  |||| | |||||| ||| |||||| |||| ||||||| |||| ||| |||||||||||||||||    
T  43449065 ggttcattgtataaatgatgtatttggtttatatcatagacaagatatatcaattactcaatgaatctaaaaaa 43448992  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 54470698 - 54470657
Alignment:
Q  274 attatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    |||||||| ||||||||||| ||||||||||||||| |||||    
T  54470698 attatagtaaagatacatcaattattcaatgaatctcaaaaa 54470657  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 48169580 - 48169624
Alignment:
Q  158 tattttagtaaagg-gtcatgtctttggacaacattattgcattt 201  Q
    |||||||||||| | |||||||||||||| |||||||||||||||    
T  48169580 tattttagtaaaagtgtcatgtctttggataacattattgcattt 48169624  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 20555363 - 20555292
Alignment:
Q  244 ttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    |||||||||||| |||||||| |||  |||||| ||| |||||||||||| |||||||||| ||||||||||    
T  20555363 ttcattacataaataatgtatttggtctatattctagacaagatacatcaattattcaatgtatctaaaaaa 20555292  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 35242073 - 35241971
Alignment:
Q  213 cacatttataaacgattatt-tctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaa 311  Q
    ||||||||||||| | |||| ||||||| || ||||||| ||||| |||||||| |||  ||||||||||| | | ||||||||||||||| ||||||||    
T  35242073 cacatttataaacaactattctcttttt-agattcattaaataaccaatgtatcaggacaatattatagtctaaacacatcagttattcaacgaatctaa 35241975  T
Q  312 aaaa 315  Q
    ||||    
T  35241974 aaaa 35241971  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 331
Target Start/End: Original strand, 23471052 - 23471143
Alignment:
Q  235 tttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaagaaatattggcttata 331  Q
    |||||| ||||||||  |||||| ||||||||||||||||       ||||||||||||||||||||||||| || |||||| |||||| |||||||    
T  23471052 tttttcgggttcattgaataacttatgtatctggattataaa-----caagatacatcagttattcaatgaacctgaaaaaggaatatttgcttata 23471143  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 4860328 - 4860270
Alignment:
Q  255 actaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||||||||||| ||||    
T  4860328 actaatgtatctggtttatat-atagaccagatacatcagttattcaatgaatctgaaaa 4860270  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 36452423 - 36452503
Alignment:
Q  235 tttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||| |||||||||| |||| |||||||||||| | | | |||||   |||||||||| |||||||||||||||| ||||    
T  36452423 ttttttaggttcattaaataagtaatgtatctggttaacaatatagatcagatacatcaattattcaatgaatctagaaaa 36452503  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 43473042 - 43472962
Alignment:
Q  73 aaaatgaacgtcattctcacttttcaatgtggtattaattaaattttt-ccaatagtacccctaattattactatgcacac 152  Q
    |||||||| |||||| | ||||||||||||  |||||||||  ||||| |||||||||||| ||||||||| ||| |||||    
T  43473042 aaaatgaatgtcattttaacttttcaatgtactattaattacttttttcccaatagtacccttaattattattatccacac 43472962  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 7943509 - 7943552
Alignment:
Q  271 tatattatagtcaagatacatcagttattcaatgaatctaaaaa 314  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||    
T  7943509 tatattgtagacaagatacatcaattattcaatgaatctaaaaa 7943552  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 21424692 - 21424747
Alignment:
Q  73 aaaatgaacgtcattctcacttttcaatgtggtattaattaaatttttccaatagt 128  Q
    |||||||| | ||||||||||||||||| | || |||||||| |||||||||||||    
T  21424692 aaaatgaatgacattctcacttttcaatatagtgttaattaactttttccaatagt 21424747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 41190947 - 41190826
Alignment:
Q  213 cacatttataaacgattatttctttttcaggttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaa 312  Q
    ||||| ||||||| | |||||  |||| || || |||| |||||| || ||| || | |||||||||||  | |||||||| |||||| || ||||| ||    
T  41190947 cacatatataaacaactattttctttttagatttattaaataactgatatatttgaactatattatagttcaaatacatcaattattcgataaatcttaa 41190848  T
Q  313 aaagaaatattggcttataaat 334  Q
    |||| ||||||| |||||||||    
T  41190847 aaagcaatattgacttataaat 41190826  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 4536527 - 4536563
Alignment:
Q  20 atactccctccgtttcaaaatgagtgt-actttagcc 55  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4536527 atactccctccgtttcaaaatgagtgtcactttagcc 4536563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 11532953 - 11533009
Alignment:
Q  259 atgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||||| ||||||||||| |  |||||||||| |||||  ||||||||||||||    
T  11532953 atgtatctgtattatattatatttcagatacatcaattattttatgaatctaaaaaa 11533009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 34447545 - 34447617
Alignment:
Q  243 gttcattacataactaatgtatctggattatattatagtcaagatacatcagttattcaatgaatctaaaaaa 315  Q
    ||||||| ||||| |||||||| ||| ||||||| ||| ||||||||||   |||  ||||||||||||||||    
T  34447545 gttcattgcataaataatgtatttggtttatattttagacaagatacattgattacacaatgaatctaaaaaa 34447617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 37724244 - 37724292
Alignment:
Q  65 tttgtttcaaaatgaacgtcattctcacttttcaatgtggtattaatta 113  Q
    ||||||||||||| || |||||| ||||||||||||||  |||||||||    
T  37724244 tttgtttcaaaataaatgtcattttcacttttcaatgtactattaatta 37724292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 43679968 - 43679940
Alignment:
Q  286 atacatcagttattcaatgaatctaaaaa 314  Q
    |||||||||||||||||||||||||||||    
T  43679968 atacatcagttattcaatgaatctaaaaa 43679940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 44137 - 44179
Alignment:
Q  290 atcagttattcaatgaatctaaaaaagaaatattggcttataa 332  Q
    ||||||||||||||||| ||||||||||||| || ||||||||    
T  44137 atcagttattcaatgaagctaaaaaagaaatttttgcttataa 44179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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