View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9970_high_6 (Length: 235)

Name: NF9970_high_6
Description: NF9970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9970_high_6
NF9970_high_6
[»] chr8 (12 HSPs)
chr8 (15-219)||(44548154-44548358)
chr8 (29-122)||(44547970-44548063)
chr8 (33-122)||(44547692-44547781)
chr8 (33-122)||(44547530-44547619)
chr8 (63-119)||(44547848-44547904)
chr8 (33-114)||(44547374-44547455)
chr8 (33-122)||(44547452-44547541)
chr8 (57-122)||(44547800-44547865)
chr8 (33-122)||(44547896-44547985)
chr8 (63-122)||(44547602-44547661)
chr8 (63-112)||(44548088-44548137)
chr8 (57-119)||(44547638-44547700)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 44548154 - 44548358
Alignment:
Q  15 ctggttctcagacgcaaaagctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagct 114  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44548154 ctggttctcagactcaaaagctaggaagggtagtggctggtcctcaggctcaagagctaggaaggatggtggctgctccacaaactcagcctcaagagct 44548253  T
Q  115 tggaaggggaaagaggtataagaaggctaacacaagatatactcaatgagggtgtttaaggaagcttggcacatagtaggatgaggcattcaatgacaac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44548254 tggaaggggaaagaggtataagaaggctaacacaagatatactcaatgagggtgtttaaggaaggttggcacatagtaggatgaggcattcaatgacaac 44548353  T
Q  215 atatc 219  Q
    |||||    
T  44548354 atatc 44548358  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 44547970 - 44548063
Alignment:
Q  29 caaaagctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||  |||| ||||||||||| |||||||    
T  44547970 caaaagctaggaagggtggtggctggtcctcaggctcaagagataggaagggtggtggcttctccacatgctcaacctcaagagctgggaaggg 44548063  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 44547692 - 44547781
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||||||| ||| ||||||| ||||||| |||||||||||||||||||||| | ||||||||| ||||| |||||| |||| |||||||    
T  44547692 agctaggaatggtggtggctggtcctcagactcaagagctaggaagggtggttgttgctccacagactcaacctcaaaagctaggaaggg 44547781  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 44547530 - 44547619
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||||||||||| || |||| |||||| |||||||||||||||||| |||| |||||||||||   ||| |||||| |||| |||||||    
T  44547530 agctaggaagggtggtagctggtcctcatgctcaagagctaggaaggatggttgctgctccacaggatcaacctcaaaagctaggaaggg 44547619  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 44547848 - 44547904
Alignment:
Q  63 ctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaa 119  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||    
T  44547848 ctcaagagctaggaagggtggtggctggtcctcaagctcagcctcaagagctaggaa 44547904  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 44547374 - 44547455
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagct 114  Q
    |||||| |||||| || |||| |||||| | |||||||||||||||||||||||||| ||| ||  |||| |||||||||||    
T  44547374 agctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagct 44547455  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 44547452 - 44547541
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    |||||| |||||| || |||| |||||| | ||||||||||||||||||||||  |||||| ||  |||| ||||||||||| |||||||    
T  44547452 agctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtgattgctcctcaggctcaacctcaagagctaggaaggg 44547541  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 44547800 - 44547865
Alignment:
Q  57 ctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    |||||||||||||||||| ||| ||||||| |||||||||  |||| ||||||||||| |||||||    
T  44547800 ctcaggctcaagagctagaaagagtggtggttgctccacatgctcaacctcaagagctaggaaggg 44547865  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 44547896 - 44547985
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||||||| ||| ||||||| | ||||| ||||| ||||| |||||||||| ||||||||||| || || |||||| |||| |||||||    
T  44547896 agctaggaatggtggtggctggttctcagactcaaaagctaagaagggtggttgctgctccacagacccaacctcaaaagctaggaaggg 44547985  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 44547602 - 44547661
Alignment:
Q  63 ctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||| |||||||||||||| |||||||||||||  ||||||||||| |||| |||||||    
T  44547602 ctcaaaagctaggaagggtgatggctgctccacatgctcagcctcaaaagctaggaaggg 44547661  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 44548088 - 44548137
Alignment:
Q  63 ctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagag 112  Q
    ||||| ||||||||||||||||||||| ||| ||| ||||||||||||||    
T  44548088 ctcaaaagctaggaagggtggtggctggtcctcaagctcagcctcaagag 44548137  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 44547638 - 44547700
Alignment:
Q  57 ctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaa 119  Q
    ||||| ||||| ||||||||||||||||||| | ||| ||| |||| ||||||||||| ||||    
T  44547638 ctcagcctcaaaagctaggaagggtggtggcgggtcctcaagctcaacctcaagagctaggaa 44547700  T

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