View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9970_low_2 (Length: 378)
Name: NF9970_low_2
Description: NF9970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9970_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 27046215 - 27046564
Alignment:
| Q |
11 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046215 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
27046314 |
T |
|
| Q |
111 |
caattagcagttgcttctaagaatggaacaccatattctgcaccatcaaaaccaaactcgactctaagtcttccgtctccggcatgtctcactattctac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046315 |
caattagcagttgcttctaagaatggaacaccatattctgcaccaccaacaccaaactcgactctaagtcttccgtctccggcatgtctcactattctac |
27046414 |
T |
|
| Q |
211 |
ctgggaaacggattgagaagttggtttagtggtttgaggnnnnnnntatagaagttgaagatataagaaagtgtgcctatatgattcattaatgaggcat |
310 |
Q |
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| T |
27046415 |
ctgggaaacggattgagaagttggtttagtggtttgaggaaaaaaatatagaagttgaagatataagaaagtgagcctatatgattcattaacgagacat |
27046514 |
T |
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| Q |
311 |
tcttctatggtcacaagcataaataaataaataaacggtgtttggataca |
360 |
Q |
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| T |
27046515 |
tcttctatgatcacaagcataaataaataaataaacggtgtttggataca |
27046564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 27086274 - 27086504
Alignment:
| Q |
11 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
110 |
Q |
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|||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27086274 |
caaagggtaacttttatccttaggagaaggaatatcaagcaccaagtcttttgcaatttctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
27086373 |
T |
|
| Q |
111 |
caattagcagttgcttctaagaatggaacaccatattctgcaccatcaaaaccaaactcgactctaagtcttccgtctccggcatgtctcactattctac |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||| || |||||| |||||| ||||| |
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| T |
27086374 |
caattagcatatgcttctaagaatggaacaccatattctgcatcaccaacaccaaactcgactctaagtcttccgtcaccagcatgtttcactagtctac |
27086473 |
T |
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| Q |
211 |
ctgggaaacggattgagaagttggtttagtg |
241 |
Q |
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|||||||| ||| |||||||||||||||||| |
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| T |
27086474 |
ctgggaaatggagtgagaagttggtttagtg |
27086504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 27041796 - 27042030
Alignment:
| Q |
11 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
110 |
Q |
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|||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041796 |
caaagggtaacttttatccttaggagaaggaatatcaagcaccaagtcttttgcaatttctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
27041895 |
T |
|
| Q |
111 |
caattagcagttgcttctaagaatggaacaccatattctgcaccatcaaaaccaaactcgactctaagtcttccgtctccggcatgtctcactattctac |
210 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| || || |||||| |||||| ||||| |
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| T |
27041896 |
caattagcatatgcttctaagaatggaacaccatattctgcaccacctagaccaaactcgactctaagtcttccatcaccagcatgtttcactagtctac |
27041995 |
T |
|
| Q |
211 |
ctgggaaacggattgagaagttggtttagtggttt |
245 |
Q |
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|||||||||| | ||||| |||||||||||||||| |
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| T |
27041996 |
ctgggaaacgcagtgagatgttggtttagtggttt |
27042030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 27063145 - 27063283
Alignment:
| Q |
11 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||| ||||||||||| |||||||||||||||||| ||| |
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| T |
27063145 |
caaagggtaatttttatcttgaggagaaggaagatcaagcaccaaatgttttgcaatttctgtgttagtattgtccaggtaatgaagagaagaaagtgtg |
27063244 |
T |
|
| Q |
111 |
caattagcagttgcttctaagaatggaacaccatattct |
149 |
Q |
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|| |||||||||||||| ||||| ||||| ||| ||||| |
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| T |
27063245 |
cagttagcagttgcttccaagaacggaacgccaaattct |
27063283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 27070218 - 27070360
Alignment:
| Q |
11 |
caaagggtaatttttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtg |
110 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||||||||| | ||||||||| || |||| ||||||||||| ||||||||| |||||||| ||| |
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| T |
27070218 |
caaagggtaatttttatcctgaggagtaggaaaatcaagcaccaaatgttttgcaatttcagtgttagtattgtccaggtaatgaagggaagaaagtgtg |
27070317 |
T |
|
| Q |
111 |
caattagcagttgcttctaagaatggaacaccatattctgcac |
153 |
Q |
| |
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|| |||||||||||||| ||||| ||||| ||| ||||||||| |
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| T |
27070318 |
cagttagcagttgcttccaagaacggaacgccaaattctgcac |
27070360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 27098964 - 27099065
Alignment:
| Q |
44 |
atcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacacca |
143 |
Q |
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|||||||||||| | ||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |||||| ||||||| ||||||||||||||| |
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| T |
27098964 |
atcaagcaccaaatgttttgcaatttctgtgtcggtattgtccaagtaattaatagaagaaagggtgcagttagcaattgcttccaagaatggaacacca |
27099063 |
T |
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| Q |
144 |
ta |
145 |
Q |
| |
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|| |
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| T |
27099064 |
ta |
27099065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 27105978 - 27106064
Alignment:
| Q |
59 |
ttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttgcttctaagaatggaacaccata |
145 |
Q |
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||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |||||| ||||||| ||||||||||||||||| |
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| T |
27105978 |
ttttgcaatttctgtgtcggtattgtccaagtaattaatagaagaaagggtgcagttagcacttgcttccaagaatggaacaccata |
27106064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 19414961 - 19415089
Alignment:
| Q |
24 |
ttatcttgaggagaaggaacatcaagcaccaagtcttttgcaatatctgtgtcagtattgtccaagtaatgaagagaagaaagggtgcaattagcagttg |
123 |
Q |
| |
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||||||||||| |||||| ||||| |||||| | |||||| | |||||||| | |||||||||||||| ||||||| |||| |||| |||||||||| |
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| T |
19414961 |
ttatcttgaggggaaggaggatcaaacaccaattgttttgccacttctgtgtctgcattgtccaagtaattaagagaatcaaggctgcagttagcagttg |
19415060 |
T |
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| Q |
124 |
cttctaagaatggaacaccatattctgca |
152 |
Q |
| |
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|||| ||||||||||| ||| |||||||| |
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|
| T |
19415061 |
cttccaagaatggaactccaaattctgca |
19415089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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