View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9970_low_5 (Length: 300)
Name: NF9970_low_5
Description: NF9970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9970_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 36083238 - 36083507
Alignment:
| Q |
19 |
ggatatgcataaaattgttccgttgttatcattaggtgaagaactgaatcacctatgtattccaaacgctcataagataagccattctcagcaccgtaag |
118 |
Q |
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| T |
36083238 |
ggatatgcatgaaattgttccgttgttatcattaggttaagaactgaatcacctatgtattccaaacgctcataagataagccattctcagcaccgtaag |
36083337 |
T |
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| Q |
119 |
tacagtgagtgaaagcctcttctagcaatagtatgttgttaaatttgtattctagaattgcttccacttcatgcagcgatggtggtgatggtggtggtgg |
218 |
Q |
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| T |
36083338 |
tacagtgagtgaaagcctcttctagcaatagtatgttcttaaattcgtattctagaattgcttccacttcatgcagcgatggtgg---tggtggtggtgg |
36083434 |
T |
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| Q |
219 |
aggaggaggcagagaatcacttaccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttct |
291 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083435 |
aggaggaggtagagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttct |
36083507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 36149135 - 36149309
Alignment:
| Q |
19 |
ggatatgcataaaattgttccgttgttatcattaggtgaagaactgaatcacctatgtattccaaacgctcataagataagccattctcagcaccgtaag |
118 |
Q |
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|||||||| | ||| |||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
36149135 |
ggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacgttcatatgataagccattctcagcaccataag |
36149234 |
T |
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| Q |
119 |
tacagtgagtgaaagcctcttctagcaatagtatgttgttaaatttgtattctagaattgcttccacttcatgca |
193 |
Q |
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| T |
36149235 |
taccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgca |
36149309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 26527763 - 26527695
Alignment:
| Q |
124 |
tgagtgaaagcctcttctagcaatagtatgttgttaaatttgtattctagaattgcttccacttcatgc |
192 |
Q |
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|||||||||||||||||||| |||||| |||| || |||| |||||| ||||| ||||||||||||||| |
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| T |
26527763 |
tgagtgaaagcctcttctagtaatagtttgttcttgaattcgtattcaagaatggcttccacttcatgc |
26527695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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