View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9970_low_9 (Length: 235)

Name: NF9970_low_9
Description: NF9970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9970_low_9
NF9970_low_9
[»] chr8 (12 HSPs)
chr8 (15-219)||(44548154-44548358)
chr8 (29-122)||(44547970-44548063)
chr8 (33-122)||(44547692-44547781)
chr8 (33-122)||(44547530-44547619)
chr8 (63-119)||(44547848-44547904)
chr8 (33-114)||(44547374-44547455)
chr8 (33-122)||(44547452-44547541)
chr8 (57-122)||(44547800-44547865)
chr8 (33-122)||(44547896-44547985)
chr8 (63-122)||(44547602-44547661)
chr8 (63-112)||(44548088-44548137)
chr8 (57-119)||(44547638-44547700)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 44548154 - 44548358
Alignment:
Q  15 ctggttctcagacgcaaaagctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagct 114  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44548154 ctggttctcagactcaaaagctaggaagggtagtggctggtcctcaggctcaagagctaggaaggatggtggctgctccacaaactcagcctcaagagct 44548253  T
Q  115 tggaaggggaaagaggtataagaaggctaacacaagatatactcaatgagggtgtttaaggaagcttggcacatagtaggatgaggcattcaatgacaac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44548254 tggaaggggaaagaggtataagaaggctaacacaagatatactcaatgagggtgtttaaggaaggttggcacatagtaggatgaggcattcaatgacaac 44548353  T
Q  215 atatc 219  Q
    |||||    
T  44548354 atatc 44548358  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 44547970 - 44548063
Alignment:
Q  29 caaaagctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||  |||| ||||||||||| |||||||    
T  44547970 caaaagctaggaagggtggtggctggtcctcaggctcaagagataggaagggtggtggcttctccacatgctcaacctcaagagctgggaaggg 44548063  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 44547692 - 44547781
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||||||| ||| ||||||| ||||||| |||||||||||||||||||||| | ||||||||| ||||| |||||| |||| |||||||    
T  44547692 agctaggaatggtggtggctggtcctcagactcaagagctaggaagggtggttgttgctccacagactcaacctcaaaagctaggaaggg 44547781  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 44547530 - 44547619
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||||||||||| || |||| |||||| |||||||||||||||||| |||| |||||||||||   ||| |||||| |||| |||||||    
T  44547530 agctaggaagggtggtagctggtcctcatgctcaagagctaggaaggatggttgctgctccacaggatcaacctcaaaagctaggaaggg 44547619  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 44547848 - 44547904
Alignment:
Q  63 ctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaa 119  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||    
T  44547848 ctcaagagctaggaagggtggtggctggtcctcaagctcagcctcaagagctaggaa 44547904  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 44547374 - 44547455
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagct 114  Q
    |||||| |||||| || |||| |||||| | |||||||||||||||||||||||||| ||| ||  |||| |||||||||||    
T  44547374 agctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagct 44547455  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 44547452 - 44547541
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    |||||| |||||| || |||| |||||| | ||||||||||||||||||||||  |||||| ||  |||| ||||||||||| |||||||    
T  44547452 agctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtgattgctcctcaggctcaacctcaagagctaggaaggg 44547541  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 44547800 - 44547865
Alignment:
Q  57 ctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    |||||||||||||||||| ||| ||||||| |||||||||  |||| ||||||||||| |||||||    
T  44547800 ctcaggctcaagagctagaaagagtggtggttgctccacatgctcaacctcaagagctaggaaggg 44547865  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 44547896 - 44547985
Alignment:
Q  33 agctaggaagggtagtggctgatcctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||||||| ||| ||||||| | ||||| ||||| ||||| |||||||||| ||||||||||| || || |||||| |||| |||||||    
T  44547896 agctaggaatggtggtggctggttctcagactcaaaagctaagaagggtggttgctgctccacagacccaacctcaaaagctaggaaggg 44547985  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 44547602 - 44547661
Alignment:
Q  63 ctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaaggg 122  Q
    ||||| |||||||||||||| |||||||||||||  ||||||||||| |||| |||||||    
T  44547602 ctcaaaagctaggaagggtgatggctgctccacatgctcagcctcaaaagctaggaaggg 44547661  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 44548088 - 44548137
Alignment:
Q  63 ctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagag 112  Q
    ||||| ||||||||||||||||||||| ||| ||| ||||||||||||||    
T  44548088 ctcaaaagctaggaagggtggtggctggtcctcaagctcagcctcaagag 44548137  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 44547638 - 44547700
Alignment:
Q  57 ctcaggctcaagagctaggaagggtggtggctgctccacaaactcagcctcaagagcttggaa 119  Q
    ||||| ||||| ||||||||||||||||||| | ||| ||| |||| ||||||||||| ||||    
T  44547638 ctcagcctcaaaagctaggaagggtggtggcgggtcctcaagctcaacctcaagagctaggaa 44547700  T

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