View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9971_high_13 (Length: 289)

Name: NF9971_high_13
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9971_high_13
NF9971_high_13
[»] chr4 (7 HSPs)
chr4 (3-254)||(14173738-14173991)
chr4 (3-254)||(14178492-14178745)
chr4 (3-254)||(44161388-44161640)
chr4 (158-254)||(28607117-28607215)
chr4 (158-254)||(28611879-28611977)
chr4 (157-254)||(11104427-11104523)
chr4 (121-220)||(24726535-24726634)
[»] chr7 (5 HSPs)
chr7 (3-254)||(15290038-15290285)
chr7 (3-216)||(15302745-15302960)
chr7 (157-252)||(37040739-37040836)
chr7 (157-235)||(12098960-12099038)
chr7 (157-234)||(12081973-12082049)
[»] chr5 (3 HSPs)
chr5 (3-252)||(29107188-29107438)
chr5 (44-253)||(42911301-42911513)
chr5 (3-45)||(42911787-42911829)
[»] chr8 (2 HSPs)
chr8 (157-254)||(12930631-12930730)
chr8 (157-254)||(12935377-12935476)
[»] chr1 (1 HSPs)
chr1 (157-254)||(34907094-34907193)
[»] chr2 (1 HSPs)
chr2 (158-252)||(8539139-8539235)
[»] chr3 (1 HSPs)
chr3 (159-254)||(51302118-51302215)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 14173738 - 14173991
Alignment:
Q  3 atagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14173738 atagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagggcatagcatttaactc 14173837  T
Q  103 ttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaagtgtg 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  14173838 ttcatcagccgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtg 14173937  T
Q  201 tgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14173938 tgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 14173991  T

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Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 14178492 - 14178745
Alignment:
Q  3 atagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178492 atagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactc 14178591  T
Q  103 ttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaagtgtg 200  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  14178592 ttcatcagccgatttcccctataaataaaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtg 14178691  T
Q  201 tgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178692 tgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 14178745  T

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Target: chr4; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 44161388 - 44161640
Alignment:
Q  3 atagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44161388 atagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactc 44161487  T
Q  103 ttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtg-aaaatacaaagtttctgtgtgtagaagtgtgt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||| |||| |||||| ||||||||||||| ||||||    
T  44161488 ttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaggcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtagaggtgtgt 44161587  T
Q  202 gagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44161588 gagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 44161640  T

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Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 28607215 - 28607117
Alignment:
Q  158 gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607215 gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 28607117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 28611977 - 28611879
Alignment:
Q  158 gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611977 gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 28611879  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 11104427 - 11104523
Alignment:
Q  157 tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    |||||||||||| ||| ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  11104427 tgaagcagaagtcaaa-tacaaagcttctatgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatacacc 11104523  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 24726634 - 24726535
Alignment:
Q  121 ctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgt 220  Q
    |||||||| |||||||| ||||||||| |||| ||   ||| ||||||  |||||||||| |||||| ||||||||||| |||  | ||| |||||||||    
T  24726634 ctataaattgaggggtatttgaaggaaggaaagcatctaagaagaagttgaaatacaaagcttctgtctgtagaagtgtatgaatgaaaagatagagtgt 24726535  T

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Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 15290038 - 15290285
Alignment:
Q  3 atagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||    
T  15290038 atagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattgaagacatgactttggtgtgaaagaaatgcatagcatttaactc 15290137  T
Q  103 ttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatac---aaagtttctgtgtgtagaagtgt 199  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||  | |||||||||||||||||   |||| ||||||||||||||||||    
T  15290138 ttcatcaactgatttcctctataaatagaggggtacttgaaggaatgaaagcatcgtagcagaagtgaaaatacaaaaaagcttctgtgtgtagaagtgt 15290237  T
Q  200 gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    |||||      ||||||||||||| |||||||||| ||||| |||||||||||||    
T  15290238 gtgag------aatagagtgttgactaaatccagaaagtgt-ggaaaaatacacc 15290285  T

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Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 15302745 - 15302960
Alignment:
Q  3 atagcttgcggtggagcagtttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactc 102  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||    
T  15302745 atagcttgcagtggagcagtttgaaagcatgacataaaatatagttttcacacattgaagacatgactttcgtgtgaaaggagtccatagcatttaactc 15302844  T
Q  103 ttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaagtgtg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||| |||  ||||||||||||||||    
T  15302845 ttcatcaactgatttcctctataaatagaggggtacttgaaggaatgaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtg 15302944  T
Q  201 tgagaggaaaaataga 216  Q
    |||||| |||||||||    
T  15302945 tgagagcaaaaataga 15302960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 37040836 - 37040739
Alignment:
Q  157 tgaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca 252  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37040836 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca 37040739  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 12098960 - 12099038
Alignment:
Q  157 tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagag 235  Q
    ||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  12098960 tgaagtagaagtgaaactacaaagtttttgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag 12099038  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 12081973 - 12082049
Alignment:
Q  157 tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccaga 234  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||   ||||| |||||||||| |||||||||||    
T  12081973 tgaagcataagtgaagatacaaagttttt-tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccaga 12082049  T

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Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 29107438 - 29107188
Alignment:
Q  3 atagcttgcggtggagcagtttgaaagcatgacataaaatatagtttt-cacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaact 101  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| || |||||||||||||||||||||||    
T  29107438 atagcttgtggtgaagcagtttgaaaacatgacataaaatatagtttttcacacattgaggacataactttggcgtaaaaggagtgcatagcatttaact 29107339  T
Q  102 cttcatcagctgatttcccctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaag--tttctgtgtgtagaagtgt 199  Q
    | |||||| ||||||||| ||||||||| |||||||||||||||||||||| ||  |||||||||||| ||||||||||  | ||||| |||||||||||    
T  29107338 catcatcaactgatttcctctataaataaaggggtacttgaaggaatgaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgt 29107239  T
Q  200 gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca 252  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  29107238 gtgagagaaaaaat--agtgttgagtaaatccagagagtgtgggaaaaataca 29107188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 44 - 253
Target Start/End: Complemental strand, 42911513 - 42911301
Alignment:
Q  44 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagag-gggtacttga 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||    
T  42911513 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactctt-ataagctgatttcctctataaatagagagggtacttga 42911415  T
Q  143 aggaatgaaatcaatgaagcagaagtgaaaat-acaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtg 239  Q
    |||||||||| ||  ||||||||||||||||  |||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42911414 aggaatgaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtg 42911315  T
Q  240 tgggaaaaatacac 253  Q
    ||| ||||||||||    
T  42911314 tggaaaaaatacac 42911301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 42911829 - 42911787
Alignment:
Q  3 atagcttgcggtggagcagtttgaaagcatgacataaaatata 45  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  42911829 atagcttgcgatggagcagtttgaaagcatgacataaaatata 42911787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 12930631 - 12930730
Alignment:
Q  157 tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930631 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 12930730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 12935377 - 12935476
Alignment:
Q  157 tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935377 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 12935476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 34907094 - 34907193
Alignment:
Q  157 tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907094 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 34907193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 8539139 - 8539235
Alignment:
Q  158 gaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca 252  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  8539139 gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaataca 8539235  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 51302118 - 51302215
Alignment:
Q  159 aagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 254  Q
    ||||| |||||||||||||||| |||||||  |||||||||||||| ||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  51302118 aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacacc 51302215  T

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