View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_high_20 (Length: 236)
Name: NF9971_high_20
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 15165056 - 15165275
Alignment:
| Q |
1 |
ttttctaccacttttttagatccctcttcttgagtgaaagaatagcccaaaaatgttgcaagtctagtgacatgaaaaattgaatcttctttaagttctt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15165056 |
ttttctaccacttttttagattcctcttcttgagtgaaagaatagcccaaaaatgttgcaagtctagtgacatgaaaaattggatcttctttaagttctt |
15165155 |
T |
|
| Q |
101 |
catatttcaaaaataaaactttgtctggcctagtcatactttctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagttaccccgttaca |
200 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
15165156 |
catatttcaaaaataaaattttgtctggactagtcatactttctttcaagtaacctaaagtatgctcccaaaatgaaccaaatggagttaccccattaca |
15165255 |
T |
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| Q |
201 |
aaaactttcaaaagcttcct |
220 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
15165256 |
aaaactttcaaaagtttcct |
15165275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15077087 - 15076866
Alignment:
| Q |
1 |
ttttctaccacttttttagatccctcttcttgagtgaaagaatagcccaaaaatgttgcaagtctagtgacatgaaaaattgaatcttctttaagttctt |
100 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15077087 |
ttttctaccacttttttcgattcctcttcttgagtgaaagaatagcccaaaaatgttgcaagtctagtgacatgaaaaattggatcttctttaagttctt |
15076988 |
T |
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| Q |
101 |
catatttcaaaaataaaactttgtctggcctagtcatactttctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagttaccccgttaca |
200 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
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| T |
15076987 |
catatttcaaaaatataactttgtctggcctaatcatactttctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagtaatcccattaca |
15076888 |
T |
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| Q |
201 |
aaaactttcaaaagcttcctct |
222 |
Q |
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|||||||||||||| ||||||| |
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| T |
15076887 |
aaaactttcaaaagtttcctct |
15076866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 15171523 - 15171644
Alignment:
| Q |
101 |
catatttcaaaaataaaactttgtctggcctagtcatactttctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagttaccccgttaca |
200 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
15171523 |
catatttcaaaaataaaactttgtctgacctagtcatactttctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagtaaccccattaca |
15171622 |
T |
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| Q |
201 |
aaaactttcaaaagcttcctct |
222 |
Q |
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|||||||||||||| ||||||| |
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| T |
15171623 |
aaaactttcaaaagtttcctct |
15171644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 4506356 - 4506526
Alignment:
| Q |
43 |
tagcccaaaaatgttgcaagtctagtgacatgaaaaattgaatcttctttaagttcttcatatttcaaaaataaaactttgtctggcctagtcatacttt |
142 |
Q |
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||||||||||| |||||| |||| |||| |||||||||| || ||||||| |||||||||||||| |||| |||||||| || |||| ||| |||| |
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| T |
4506356 |
tagcccaaaaaatttgcaattctattgacttgaaaaattgcattctctttaacatcttcatatttcaagaatagaactttgtgtgatctagccatgcttt |
4506455 |
T |
|
| Q |
143 |
ctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagttaccccgttacaaaaactttcaaaa |
213 |
Q |
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| ||||||||||| || ||||| ||||||||||||||||||||| ||| ||| | |||| ||||||||||| |
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| T |
4506456 |
ccttcaagtaacccaacttatgatcccaaaatgaaccaaatggacttatcccatcacaataactttcaaaa |
4506526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 15751477 - 15751383
Alignment:
| Q |
87 |
ttctttaagttcttcatatttcaaaaataaaactttgtctggcctagtcatactttctttcaagtaacctaaattatgctcccaaaatgaaccaa |
181 |
Q |
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||||||||| ||||||||||||| |||||||| |||||||| |||| || || || ||||| || ||||| ||| |||||||||||||||| |
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| T |
15751477 |
ttctttaagatcttcatatttcatgaataaaaccttgtctggtctagctatgctctcgttcaaatagcctaacacatggtcccaaaatgaaccaa |
15751383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 1626558 - 1626669
Alignment:
| Q |
70 |
acatgaaaaattgaatcttctttaagttcttcatatttcaaaaataaaactttgtctggcctagtcatactttctttcaagtaacctaaattatgctccc |
169 |
Q |
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||||||||| || |||||||||||| |||||||||||||| ||||||| |||| ||| |||| | || || ||||||||||| || |||| |||| |
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| T |
1626558 |
acatgaaaatttatatcttctttaagatcttcatatttcaagaataaaatcttgtttggtctagctttgctctccttcaagtaacccaacatatggtccc |
1626657 |
T |
|
| Q |
170 |
aaaatgaaccaa |
181 |
Q |
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|||||| ||||| |
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| T |
1626658 |
aaaatggaccaa |
1626669 |
T |
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