View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_high_3 (Length: 515)
Name: NF9971_high_3
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 37 - 503
Target Start/End: Complemental strand, 21236199 - 21235731
Alignment:
| Q |
37 |
taagagagtatgacacgaccctatgatgtaacagtaggaagttcgagaataattagaaaattgatcacacaaaacgtggtcaacaacaaagaaaccttca |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21236199 |
taagagagtatgacacgaccctatgatgtaacagtaggaagttcgagaataattagaaaattgatcacacaaaacgtggtcaacaacaaagaaacctgca |
21236100 |
T |
|
| Q |
137 |
ttggcaagcctatcaacacacat--tatcttccctataaaagtgagtgattgtcgtctaaagtttctaatgatattgaaagaaaatcattaacaataaga |
234 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21236099 |
ttggcaagcctatcaactcacatattatcttccctataaaagtgagagattgtcgtctaaagtttctaatgatattgaaagaaaatcattaacaataaga |
21236000 |
T |
|
| Q |
235 |
ttggcgtgatacaaaaagtgttatattatttttctttctcttcttcttcgacaataaggatatctgatgacacaaacctattggttaaattttttggtaa |
334 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21235999 |
ttggcatgatacaaaaagtgttatattatttttctttctcttcttcttcgacaataaggatatctgatgacacaaacctattggttaaattttttggtaa |
21235900 |
T |
|
| Q |
335 |
attacatcgacattaatcatcttttattccgtgattggtgtataccattgatgtaagaaccgaaaatttttaagccaaaagtttactcgataaaagtctt |
434 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21235899 |
attacatcgacattaatcatctttgattccatgattggtgtataccattgatgtaagaaccgaaaatttttaaaccaaaagtttactcgataaaagtctt |
21235800 |
T |
|
| Q |
435 |
ttatagtcgacttaattagaagcacgaggttttaaaactaacatagaacttaaataccatttgatgtcc |
503 |
Q |
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||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
21235799 |
ttatagtggacttaattagaagcacaaggttttgaaactaaaatagaacttaaataccatttgatgtcc |
21235731 |
T |
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