View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_high_6 (Length: 446)
Name: NF9971_high_6
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Original strand, 1024091 - 1024519
Alignment:
| Q |
12 |
cataggacagtgtgtttgatattcatttaaaggcaatcaaagcatataggtacacattcaattgcaattcgtactttgattgggccaccaaaattttgaa |
111 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1024091 |
cataggacagtgtgtttgatattcaattcaaggcaatcaaagcatataggtacacattcaattgctattcgtactttgattgggccaccaaaattttgaa |
1024190 |
T |
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| Q |
112 |
atactatttgagaaaataagaagtatggagtcttctgccgattcagactccgtgttggtcttatgtgtcacttattctatgaattcaatga--------- |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1024191 |
atactatttgagaaaataagaagtatggagtcttctgccaattcagactccgtgttggtcttatgtgtcacttattctatgaattcaatgaaacatttga |
1024290 |
T |
|
| Q |
203 |
---ttaattatcaatggaatgtgctgcttcctgtattgccataatatagtagaatcaagttgtggcttgcatgtattaaaattcttattact---aacta |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1024291 |
gagttaattatcaatggaatgtgctgcttcctgtattgccataatatagtagaatcaagttgtggcttgcatgtattaaaattcttattactcctaacta |
1024390 |
T |
|
| Q |
297 |
tgtgtgcaagagtaatctagattctagatagttgtaagttagtacaccttaagttattttttgttccctaggtgtggtggatatttggaatcacggtgac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1024391 |
tgtgtgcaagagtaatctagattctagatagttgtaagttagtacaccttaagttattttttgttccctaggtgtggtggatatttggaatcacggtgac |
1024490 |
T |
|
| Q |
397 |
actgtgattttgttaaagctttaaagtat |
425 |
Q |
| |
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|||||||||||||||||||| |||||||| |
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| T |
1024491 |
actgtgattttgttaaagctctaaagtat |
1024519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Original strand, 10379851 - 10379889
Alignment:
| Q |
387 |
tcacggtgacactgtgattttgttaaagctttaaagtat |
425 |
Q |
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| T |
10379851 |
tcacggtgacactgcgattttgttaaagttttaaagtat |
10379889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 19413286 - 19413326
Alignment:
| Q |
385 |
aatcacggtgacactgtgattttgtta-aagctttaaagta |
424 |
Q |
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| T |
19413286 |
aatcacggtgacactgtgattttgttagaagcttcaaagta |
19413326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 5933213 - 5933253
Alignment:
| Q |
385 |
aatcacggtgacactgtgattttgttaaagctttaaagtat |
425 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||||| |
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| T |
5933213 |
aatcacggtaacactgtgattttgttaaagctacaaagtat |
5933253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 28496627 - 28496655
Alignment:
| Q |
385 |
aatcacggtgacactgtgattttgttaaa |
413 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
28496627 |
aatcacggtgacactgtgattttgttaaa |
28496655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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