View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9971_high_7 (Length: 442)

Name: NF9971_high_7
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9971_high_7
NF9971_high_7
[»] chr8 (1 HSPs)
chr8 (1-431)||(40704830-40705262)
[»] chr7 (2 HSPs)
chr7 (49-201)||(19056580-19056732)
chr7 (258-325)||(19056756-19056819)
[»] chr3 (4 HSPs)
chr3 (49-201)||(50805455-50805607)
chr3 (49-201)||(50870270-50870422)
chr3 (258-325)||(50805368-50805431)
chr3 (258-325)||(50870446-50870509)
[»] scaffold0411 (2 HSPs)
scaffold0411 (285-426)||(11704-11845)
scaffold0411 (93-223)||(11888-12020)
[»] chr1 (1 HSPs)
chr1 (182-239)||(27728190-27728249)
[»] chr6 (1 HSPs)
chr6 (195-238)||(9075391-9075434)
[»] chr2 (1 HSPs)
chr2 (207-240)||(14408744-14408777)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 40704830 - 40705262
Alignment:
Q  1 tttttaattattgtagtgatttctattcatgagatgaaggnnnnnnntgaattttattagaatatatacactcattttacatatcctatgagaagcttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40704830 tttttaattattgtagtgatttctattcatgagatgaaggaaaaaaatgaattttattagaatatatacactcattttacatatcctatgagaagcttag 40704929  T
Q  101 ctgttaagtttgaggttaattgagccactatagctcaaagtcaccaattgcaaattgaaacttatatgtttggctggacagtgagtttggcgaaatcac- 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40704930 ctgttaagtttgaggttaattgagccactatagctcaaagtcaccaattgcaaattgaaacttatatgtttggctggacagtgagtttggcgaaatcact 40705029  T
Q  200 -tgggactgtgattttgttgaagctccaatgtgtagctttttgctgaaatcgccgttaagcactgtgatttcgtcaaactcaccgcccgcccatccaaac 298  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||    
T  40705030 gtgggactgtgattttgttgaagctccaacgtgtagctttttgctgaaatcgcccttacgcactgtgatttcgtcaaactcatcgcccgcccatccaaac 40705129  T
Q  299 atattgagaacttaatttaagaagcaatcaggnnnnnnnattgtttgcaaattaagcctacaaggtcaggttatgacttaaatagatgacttaaagggtc 398  Q
    |||||||||||||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40705130 atattgagaacttaatttaagaagcaatcacgtttttttattgtttgcaaattaagcctacaaggtcaggttatgacttaaatagatgacttaaagggtc 40705229  T
Q  399 aatttgttcaaatcccaatcctgccacaggttc 431  Q
    |||||||||||||||||||||||||||||||||    
T  40705230 aatttgttcaaatcccaatcctgccacaggttc 40705262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 49 - 201
Target Start/End: Original strand, 19056580 - 19056732
Alignment:
Q  49 gaattttattagaatatatacactcattttacatatcctatgagaagcttagctgttaagtttgaggttaattgagccactatagctcaaagtcaccaat 148  Q
    ||||||||||||||| ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  19056580 gaattttattagaatgtatacactcattttacaaattctgtgagaagcctagctgttaagtttgaggttaattgagctattgtagctcaaagtcaccaat 19056679  T
Q  149 tgcaaattgaaacttatatgtttggctggacagtgagtttggcgaaatcactg 201  Q
    |||||||||||||| ||||||||||||| |||||||||| |||| ||||||||    
T  19056680 tgcaaattgaaactaatatgtttggctgaacagtgagttaggcggaatcactg 19056732  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 19056756 - 19056819
Alignment:
Q  258 gcactgtgatttcgtcaaactcaccgcccgcccatccaaacatattgagaacttaatttaagaagcaa 325  Q
    ||||||||||||||| |||||||||||||    | ||||||||||||||||||| |||||||||||||    
T  19056756 gcactgtgatttcgtgaaactcaccgccc----aaccaaacatattgagaacttcatttaagaagcaa 19056819  T

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Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 50805607 - 50805455
Alignment:
Q  49 gaattttattagaatatatacactcattttacatatcctatgagaagcttagctgttaagtttgaggttaattgagccactatagctcaaagtcaccaat 148  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  50805607 gaattttattagaatgtatacactcattttacatattctgtgagaagcctagctgttaagtttgaggttaattgagctattgtagctcaaagtcaccaat 50805508  T
Q  149 tgcaaattgaaacttatatgtttggctggacagtgagtttggcgaaatcactg 201  Q
    |||||||||||||| ||||||||||||| ||| |||||| | || ||||||||    
T  50805507 tgcaaattgaaactaatatgtttggctgaacactgagttagacggaatcactg 50805455  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 49 - 201
Target Start/End: Original strand, 50870270 - 50870422
Alignment:
Q  49 gaattttattagaatatatacactcattttacatatcctatgagaagcttagctgttaagtttgaggttaattgagccactatagctcaaagtcaccaat 148  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  50870270 gaattttattagaatgtatacactcattttacatattctgtgagaagcctagctgttaagtttgaggttaattgagctattgtagctcaaagtcaccaat 50870369  T
Q  149 tgcaaattgaaacttatatgtttggctggacagtgagtttggcgaaatcactg 201  Q
    |||||||||||||| ||||||||||||| ||| |||||| | || ||||||||    
T  50870370 tgcaaattgaaactaatatgtttggctgaacactgagttagacggaatcactg 50870422  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 50805431 - 50805368
Alignment:
Q  258 gcactgtgatttcgtcaaactcaccgcccgcccatccaaacatattgagaacttaatttaagaagcaa 325  Q
    ||||||||||||||| |||||||||||||    | ||||||||||||||||||| |||||||||||||    
T  50805431 gcactgtgatttcgtgaaactcaccgccc----agccaaacatattgagaacttcatttaagaagcaa 50805368  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 50870446 - 50870509
Alignment:
Q  258 gcactgtgatttcgtcaaactcaccgcccgcccatccaaacatattgagaacttaatttaagaagcaa 325  Q
    ||||||||||||||| |||||||||||||    | ||||||||||||||||||| |||||||||||||    
T  50870446 gcactgtgatttcgtgaaactcaccgccc----agccaaacatattgagaacttcatttaagaagcaa 50870509  T

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Target: scaffold0411 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 285 - 426
Target Start/End: Complemental strand, 11845 - 11704
Alignment:
Q  285 ccgcccatccaaacatattgagaacttaatttaagaagcaatcaggnnnnnnnattgtttgcaaattaagcctacaaggtcaggttatgacttaaataga 384  Q
    |||||||  ||||||||||||||||||||||||||||||||  | |       |||||||||||||||||||||||||||||||||||||||||||||||    
T  11845 ccgcccaatcaaacatattgagaacttaatttaagaagcaaaaacgcttttttattgtttgcaaattaagcctacaaggtcaggttatgacttaaataga 11746  T
Q  385 tgacttaaagggtcaatttgttcaaatcccaatcctgccaca 426  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  11745 tgacataaagggtcaatttgttcaaatcccaatcctgccaca 11704  T

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Target: scaffold0411; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 12020 - 11888
Alignment:
Q  93 aagcttagctgttaagtttgaggttaattgagccactatagctcaaagtcaccaattgcaaattgaaacttatatgtttggctggacagtgagtttggcg 192  Q
    |||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || |    
T  12020 aagcctagttgttaagtttgaggttaattgagccattatagttcaaagtcaccaattgcaaattgaaactaatatgtttggctggacagtgagttaggtg 11921  T
Q  193 aaatca--ctgggactgtgattttgttgaagct 223  Q
     |||||   |||  |||||||||||||||||||    
T  11920 gaatcattttggagctgtgattttgttgaagct 11888  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 27728249 - 27728190
Alignment:
Q  182 tgagtttggcgaaatcact--gggactgtgattttgttgaagctccaatgtgtagctttt 239  Q
    |||||||| || |||||||  || |||||||||||||||||||||||| |||||||||||    
T  27728249 tgagtttgacgcaatcactatggaactgtgattttgttgaagctccaaagtgtagctttt 27728190  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 9075391 - 9075434
Alignment:
Q  195 atcactgggactgtgattttgttgaagctccaatgtgtagcttt 238  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||    
T  9075391 atcactggctctgtgattttgttgaagctccaaagtgtagcttt 9075434  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 14408777 - 14408744
Alignment:
Q  207 gtgattttgttgaagctccaatgtgtagcttttt 240  Q
    ||||||||||||||||||||| ||||||||||||    
T  14408777 gtgattttgttgaagctccaaagtgtagcttttt 14408744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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