View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_low_11 (Length: 394)
Name: NF9971_low_11
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_low_11 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0051 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 41156 - 40777
Alignment:
| Q |
12 |
agagagaagtggggaataaattgtggaagagaaattttctgtctccaaatataaaaaatgatgtcaaaagtatctggtcaaatgtcaatatttttcttct |
111 |
Q |
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| T |
41156 |
agagagaagtggggaataaattgtggaagagaaattttctgtctccaaatataaaaaatgatgtcaaaagtatctggtcaaatatcaatatttttcttct |
41057 |
T |
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| Q |
112 |
ttcaaatagacacattgatgtcttgatcttagtttatgctattgattcaggtgatgcactaaatttgacagagcatgaaaaactacgagtgtaagaccaa |
211 |
Q |
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| T |
41056 |
ttcaaatagacacattgatgtcttgatcttagtttatgctattgattcaggtgatgcactaaatttgacagagcatgaaaaactacgagtgtaagaccaa |
40957 |
T |
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| Q |
212 |
acaatgacccgacaaacccgaagatctaatccatcttcattaaattgattcagttttttctctttccatgtttggctccaatccaatcaaacccgacctc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40956 |
acaatgacccgacaaacccgaagatctaatccatcttcattaaattgattcagttttttctctttccatgtttggctccaacccaatcaaacccgacctc |
40857 |
T |
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| Q |
312 |
tattggtttaagtatcagtagtttcaagtcattcaaaatcgatcaactgcagcaacacaaaccaaacaattatattttattat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
40856 |
tattggtttaagtatcagtagtttcaagtcattcaaaatcgatcaagt---gcaacacaaaccaaacaattatattttattat |
40777 |
T |
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