View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_low_12 (Length: 392)
Name: NF9971_low_12
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 226 - 373
Target Start/End: Complemental strand, 8315212 - 8315060
Alignment:
| Q |
226 |
ttttgaaccacctcctttgcatccaacctttttactagagtttctagttgaatgctaagagtgtttagcatgtttttaatcatt-----tgttgtctcat |
320 |
Q |
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| T |
8315212 |
ttttgaaccacctcctttgcatccaacctttttactagagtttctagttgaatgctaagagtgtttaacatgtttttaatcatttgtaatgttgtctcat |
8315113 |
T |
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| Q |
321 |
gttaatgtgctgtgttctctatcgtttggttttcattgtcaacatgtttctcg |
373 |
Q |
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| T |
8315112 |
gttaatgtgttgtgttctctatcgtttggttttcattgtcaacatgtttctcg |
8315060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 8320267 - 8320200
Alignment:
| Q |
120 |
ttgtggaggttagctagcgttgttgcttttgtaggagaaatttggatgatctgctcaaccatggttat |
187 |
Q |
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| T |
8320267 |
ttgtggaggttagctagcgttgttgcatttgtaggagaaatttggatgatctgctcaaccatggttat |
8320200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 8320331 - 8320265
Alignment:
| Q |
30 |
ctttagttgccttcgtgcactgagtgatcatcacttttaggctcagtacccttgattgttgctattg |
96 |
Q |
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| T |
8320331 |
ctttagtcgccttcgtgcactgagtgatcatcacttttaggctcagtacccttgattattgctattg |
8320265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 28311801 - 28311913
Alignment:
| Q |
113 |
gattagcttgtggaggttagctagcgttgttgcttttgtaggagaaatttggatgatctgctcaaccatggttataagtgttggaataaggatttctctg |
212 |
Q |
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| T |
28311801 |
gattagcttgtggaggttggagggcgttgttacttttgtaggaaaaattcagatgatctgttcaaccagggttataagtattagaatacgtatttctctg |
28311900 |
T |
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| Q |
213 |
ctgcctggtaaag |
225 |
Q |
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| T |
28311901 |
ctccctgataaag |
28311913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 19002585 - 19002520
Alignment:
| Q |
304 |
atcatttgttgtctcatgttaatgtgctgtgttctctatcgtttggttttcattgtcaacatgttt |
369 |
Q |
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| T |
19002585 |
atcatttattgtctcaagttaatgttttatgtcctctatcgtctgattttcattttcaacatgttt |
19002520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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