View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_low_15 (Length: 353)
Name: NF9971_low_15
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_low_15 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 6359410 - 6359075
Alignment:
| Q |
18 |
aatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcagctgatgtacaatgattatgagtggaaaaacgaagggattaggtt |
117 |
Q |
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| T |
6359410 |
aatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcagctgatgtacaacgattatgagtggaaaaacgaagggattaggtt |
6359311 |
T |
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| Q |
118 |
attggatcgagatttctgtaaagcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtagatagagagaattacaaggacgagctta |
217 |
Q |
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| T |
6359310 |
attggatcgagatttctgtaatgcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtaaatagagagaattacaaggacgagctta |
6359211 |
T |
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| Q |
218 |
aattcaaaatgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggat |
317 |
Q |
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| T |
6359210 |
aattcaaaacgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggat |
6359111 |
T |
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| Q |
318 |
ctgacttcatcgacataaactgtaaatcaatttcat |
353 |
Q |
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| T |
6359110 |
ctgacttcatcgacataaactgtaaatcaatttcat |
6359075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 353
Target Start/End: Original strand, 32857285 - 32857386
Alignment:
| Q |
252 |
tttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggatctgacttcatcgacataaactgtaaatcaatttc |
351 |
Q |
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| T |
32857285 |
tttgcagtttctcaatcattttatggatggaaatagcttcatgagaatctacatatagtcaaggatttgacttcatggatataaacagcaaatcaatttc |
32857384 |
T |
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| Q |
352 |
at |
353 |
Q |
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| T |
32857385 |
at |
32857386 |
T |
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