View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9971_low_16 (Length: 352)
Name: NF9971_low_16
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 34924514 - 34924836
Alignment:
| Q |
18 |
acaaactctttttcgcatggcatggaagaaaaaataaccatcattattaaaaccctccatatctgtagctgttcaagaactatttaaactattaaacttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34924514 |
acaaactctttttcgcatggcatggaagaaaaaataaacatcattattaaaaccctccatatctgtagctgttcaagaactatttaaactattaaacttc |
34924613 |
T |
|
| Q |
118 |
aaaggtaatcagaaatacatgtaccagtacaactaccactcaagaatgagagaaaagttttagcatcatcatttaaggcttctacacttccaagtttaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34924614 |
aaaggtaatcagaaatacatgtaccagtacaactaccactcaagaatgagagaaaagttttagcatcatcatttcaggcttctacacttccaagtttaaa |
34924713 |
T |
|
| Q |
218 |
acgcaatgtaatgaattccattgaaggtatgccacggagacacaannnnnnnattcagaagcttaaggagaatatattcattgtcggaacacaaagcttc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34924714 |
acgcaatgtaatgaattccattgaaggtatgccacggagacacaatttttttattcagaagcttaaggagaatatattcattgtcggaacacaaagcttc |
34924813 |
T |
|
| Q |
318 |
catgtatgag-tttagacgccct |
339 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
34924814 |
catgtatgagttttagacgccct |
34924836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 34929166 - 34929203
Alignment:
| Q |
302 |
cggaacacaaagcttccatgtatgagtttagacgccct |
339 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
34929166 |
cggaacacaaagcttccatatatgagtttagaccccct |
34929203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University