View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_low_18 (Length: 272)
Name: NF9971_low_18
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 51530749 - 51530573
Alignment:
| Q |
1 |
ttgtaatccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactcagccatgttcttagatcagagcttagatttccagtactgttattc |
100 |
Q |
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| T |
51530749 |
ttgtaatccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactgagccatgttcttagatcagagcttagatttccagtactgttattc |
51530650 |
T |
|
| Q |
101 |
ttccctgtacagaagattttatagcacatttagtttatttacaaattattatatgtgtgaacgtattagtttcagta |
177 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
51530649 |
ttccctgtacagaggattttatagcacatttagtttatttacaaattattatatgtgtcaacgtattagttttagta |
51530573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 51524558 - 51524458
Alignment:
| Q |
8 |
ccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactcagccatgttcttagatcagagcttagatttccagtactgttattcttccctg |
107 |
Q |
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|||| ||||||||||| ||| ||||||| || |||||||||||||||||||||||| ||||||||| || |||| ||||| || ||||||| |||| ||| |
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| T |
51524558 |
ccttctaatccttctatacatgtgtctggatacacaagaacagcactcagccatgtccttagatcacagtttagttttcctgtgctgttatccttctctg |
51524459 |
T |
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| Q |
108 |
t |
108 |
Q |
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| |
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| T |
51524458 |
t |
51524458 |
T |
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