View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9971_low_20 (Length: 259)
Name: NF9971_low_20
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 6522683 - 6522451
Alignment:
| Q |
20 |
tagcatctatatcaatagcaaaacacaatttgtagcatcccacagtaacataaaaagagaatggtaaaacatgtagaagcagaatatgcaacatgatatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522683 |
tagcatctatatcaatagcaaaacacaatttgtagcatcccacagtaacataaaaagagaatggtaaaacatgtagaagcagaatatgcaacatgatatt |
6522584 |
T |
|
| Q |
120 |
ctcaacaaaactttagggtgttgtatggtcgttcacctttatttatttacaccaacatgatattcaaattatttccttgagtttcctttaatatgcaata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522583 |
ctcaacaaaactttagggtgttgtatggtcgttcacctttatttatttacaccaacatgatattcaaattatttccttgagtttcctttaatatgcaata |
6522484 |
T |
|
| Q |
220 |
catagtagtacattcaaattatttcctttgctt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
6522483 |
catagtagtacattcaaattatttccttggctt |
6522451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 31448897 - 31448849
Alignment:
| Q |
44 |
acaatttgtagcatcccacagtaacataaaaagagaatggtaaaacatg |
92 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||| ||||||||| |
|
|
| T |
31448897 |
acaatttgtagcaatccacagtaacttaaaaagacaatgctaaaacatg |
31448849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University