View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9971_low_21 (Length: 250)

Name: NF9971_low_21
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9971_low_21
NF9971_low_21
[»] chr1 (26 HSPs)
chr1 (36-163)||(3739805-3739932)
chr1 (41-157)||(3739811-3739927)
chr1 (49-155)||(29855063-29855169)
chr1 (35-163)||(19758261-19758390)
chr1 (41-164)||(30693332-30693455)
chr1 (45-164)||(47543600-47543719)
chr1 (50-152)||(29855060-29855162)
chr1 (42-163)||(37918905-37919026)
chr1 (49-150)||(3693991-3694092)
chr1 (45-118)||(6061496-6061569)
chr1 (42-115)||(30295920-30295993)
chr1 (49-115)||(5056333-5056399)
chr1 (42-164)||(30693325-30693447)
chr1 (49-102)||(35310304-35310357)
chr1 (50-118)||(24023960-24024028)
chr1 (107-151)||(35310315-35310359)
chr1 (77-163)||(47543590-47543676)
chr1 (108-157)||(19758335-19758384)
chr1 (79-168)||(24023959-24024048)
chr1 (49-166)||(29846621-29846738)
chr1 (125-170)||(38067215-38067260)
chr1 (107-163)||(3694050-3694106)
chr1 (69-159)||(5056319-5056409)
chr1 (41-115)||(15343219-15343293)
chr1 (63-129)||(48050938-48051004)
chr1 (83-164)||(30295912-30295993)
[»] chr2 (53 HSPs)
chr2 (36-165)||(31469063-31469192)
chr2 (42-165)||(944769-944892)
chr2 (42-157)||(31469068-31469183)
chr2 (49-163)||(10459271-10459385)
chr2 (41-169)||(10459251-10459379)
chr2 (49-160)||(41374534-41374645)
chr2 (50-162)||(16564384-16564494)
chr2 (49-157)||(16180432-16180540)
chr2 (50-166)||(38935351-38935467)
chr2 (49-161)||(43398831-43398943)
chr2 (41-114)||(17437166-17437239)
chr2 (41-153)||(2949039-2949151)
chr2 (49-163)||(19924309-19924420)
chr2 (41-165)||(41374518-41374642)
chr2 (41-152)||(16180432-16180543)
chr2 (41-149)||(944776-944884)
chr2 (44-148)||(4224983-4225087)
chr2 (50-121)||(2884262-2884333)
chr2 (44-115)||(7932743-7932814)
chr2 (50-156)||(41912075-41912182)
chr2 (40-165)||(38935359-38935484)
chr2 (100-164)||(2884246-2884310)
chr2 (84-164)||(17437166-17437246)
chr2 (56-163)||(24037575-24037682)
chr2 (41-99)||(29291119-29291177)
chr2 (60-118)||(35693934-35693992)
chr2 (61-149)||(30517873-30517959)
chr2 (44-105)||(33829389-33829450)
chr2 (48-168)||(35311189-35311309)
chr2 (49-150)||(43042170-43042271)
chr2 (53-149)||(11386318-11386414)
chr2 (100-168)||(29291120-29291188)
chr2 (100-160)||(33829383-33829443)
chr2 (68-131)||(13724136-13724199)
chr2 (108-171)||(14781903-14781966)
chr2 (50-153)||(43398844-43398947)
chr2 (51-147)||(10814868-10814961)
chr2 (61-147)||(18007506-18007592)
chr2 (49-106)||(35311232-35311290)
chr2 (50-112)||(44726824-44726886)
chr2 (50-103)||(15660702-15660755)
chr2 (48-169)||(11386292-11386415)
chr2 (96-156)||(41099030-41099090)
chr2 (49-93)||(41099039-41099083)
chr2 (52-115)||(4592447-4592510)
chr2 (42-156)||(16564376-16564488)
chr2 (51-114)||(25089955-25090017)
chr2 (48-91)||(30517917-30517960)
chr2 (46-121)||(40823562-40823637)
chr2 (68-166)||(19924293-19924390)
chr2 (66-131)||(11686169-11686234)
chr2 (66-131)||(11714842-11714907)
chr2 (50-166)||(24037590-24037706)
[»] chr5 (55 HSPs)
chr5 (35-163)||(39030554-39030682)
chr5 (42-163)||(33669918-33670039)
chr5 (49-157)||(39030560-39030668)
chr5 (41-164)||(34252714-34252837)
chr5 (45-164)||(42324870-42324989)
chr5 (41-165)||(34252706-34252830)
chr5 (49-166)||(33669932-33670049)
chr5 (49-163)||(2424429-2424543)
chr5 (41-163)||(9956489-9956611)
chr5 (50-141)||(504130-504219)
chr5 (67-163)||(38958052-38958148)
chr5 (61-148)||(2884046-2884132)
chr5 (44-154)||(17555944-17556055)
chr5 (49-115)||(38958066-38958132)
chr5 (50-111)||(26835273-26835334)
chr5 (49-161)||(9956503-9956615)
chr5 (41-148)||(14646368-14646475)
chr5 (49-163)||(968273-968387)
chr5 (50-149)||(30293382-30293481)
chr5 (36-115)||(33498353-33498432)
chr5 (62-149)||(42324898-42324985)
chr5 (50-164)||(2424444-2424558)
chr5 (50-148)||(15119303-15119401)
chr5 (61-111)||(26730097-26730147)
chr5 (42-163)||(5727714-5727834)
chr5 (51-164)||(16500564-16500677)
chr5 (50-115)||(20185352-20185416)
chr5 (50-111)||(26746239-26746299)
chr5 (50-110)||(42708588-42708648)
chr5 (39-148)||(17555939-17556049)
chr5 (77-163)||(37040136-37040221)
chr5 (41-94)||(40898482-40898535)
chr5 (41-149)||(968279-968387)
chr5 (46-118)||(17234568-17234640)
chr5 (70-118)||(28023959-28024007)
chr5 (48-148)||(30293382-30293482)
chr5 (45-156)||(5727714-5727824)
chr5 (44-91)||(12619682-12619729)
chr5 (43-94)||(29960470-29960521)
chr5 (62-96)||(11507888-11507922)
chr5 (62-96)||(11515259-11515293)
chr5 (62-96)||(11522661-11522695)
chr5 (62-96)||(11530073-11530107)
chr5 (50-148)||(15119303-15119401)
chr5 (41-163)||(25467103-25467225)
chr5 (44-90)||(37040074-37040120)
chr5 (72-129)||(3549585-3549642)
chr5 (61-148)||(504130-504215)
chr5 (50-90)||(2884092-2884132)
chr5 (42-106)||(4576877-4576941)
chr5 (62-118)||(6021979-6022035)
chr5 (50-166)||(14646368-14646484)
chr5 (49-169)||(25467091-25467211)
chr5 (42-94)||(36858022-36858074)
chr5 (41-165)||(39014998-39015122)
[»] chr7 (31 HSPs)
chr7 (54-165)||(16866390-16866501)
chr7 (45-164)||(3719867-3719986)
chr7 (40-113)||(6803303-6803376)
chr7 (46-115)||(44816469-44816538)
chr7 (49-144)||(16866406-16866501)
chr7 (61-154)||(18731990-18732083)
chr7 (49-163)||(5026145-5026256)
chr7 (50-158)||(30794447-30794555)
chr7 (41-164)||(3769743-3769866)
chr7 (86-161)||(27147590-27147665)
chr7 (41-148)||(30794447-30794554)
chr7 (50-154)||(14773476-14773581)
chr7 (50-154)||(15223928-15224033)
chr7 (44-156)||(18731990-18732101)
chr7 (42-118)||(47967911-47967987)
chr7 (40-149)||(3719873-3719982)
chr7 (50-115)||(23971224-23971288)
chr7 (41-106)||(1554883-1554948)
chr7 (108-165)||(6803296-6803353)
chr7 (50-91)||(27147603-27147644)
chr7 (77-153)||(5026141-5026217)
chr7 (44-163)||(14773461-14773581)
chr7 (44-163)||(15223913-15224033)
chr7 (50-166)||(23971191-23971306)
chr7 (70-154)||(32652406-32652490)
chr7 (56-104)||(34515855-34515903)
chr7 (52-118)||(4259342-4259408)
chr7 (83-122)||(21253129-21253168)
chr7 (132-165)||(13591027-13591060)
chr7 (68-129)||(24710704-24710765)
chr7 (70-166)||(47967901-47967997)
[»] chr8 (22 HSPs)
chr8 (161-242)||(15164695-15164776)
chr8 (61-157)||(11114253-11114349)
chr8 (44-116)||(29110997-29111069)
chr8 (50-150)||(35901039-35901139)
chr8 (42-164)||(8777767-8777889)
chr8 (49-162)||(7974778-7974891)
chr8 (57-115)||(13209977-13210035)
chr8 (45-166)||(9548038-9548158)
chr8 (41-154)||(29110956-29111069)
chr8 (49-156)||(35901040-35901147)
chr8 (50-148)||(33557781-33557879)
chr8 (56-163)||(15114629-15114737)
chr8 (1-37)||(15164774-15164810)
chr8 (50-153)||(33557781-33557884)
chr8 (63-156)||(29797938-29798034)
chr8 (41-93)||(11114297-11114349)
chr8 (50-149)||(8637235-8637334)
chr8 (175-227)||(15077375-15077431)
chr8 (108-147)||(42704504-42704543)
chr8 (1-37)||(15077333-15077369)
chr8 (108-148)||(44080739-44080779)
chr8 (50-90)||(44080739-44080779)
[»] chr3 (19 HSPs)
chr3 (41-156)||(32221468-32221583)
chr3 (36-164)||(46829041-46829162)
chr3 (50-156)||(46829047-46829146)
chr3 (50-165)||(31280161-31280276)
chr3 (42-162)||(32221468-32221588)
chr3 (50-115)||(40905808-40905873)
chr3 (49-158)||(47783083-47783192)
chr3 (49-165)||(26914439-26914554)
chr3 (56-148)||(31280161-31280253)
chr3 (49-163)||(47783069-47783183)
chr3 (48-164)||(26439321-26439428)
chr3 (45-115)||(22756913-22756982)
chr3 (63-135)||(30443757-30443829)
chr3 (63-135)||(30443757-30443829)
chr3 (49-164)||(21383693-21383807)
chr3 (49-148)||(29637439-29637538)
chr3 (54-144)||(23314684-23314774)
chr3 (75-164)||(15282629-15282718)
chr3 (42-150)||(29637431-29637539)
[»] chr6 (33 HSPs)
chr6 (49-163)||(31323819-31323933)
chr6 (49-163)||(28004614-28004728)
chr6 (49-164)||(14446701-14446816)
chr6 (61-164)||(2282415-2282518)
chr6 (49-164)||(31323804-31323919)
chr6 (49-163)||(30531183-30531297)
chr6 (42-115)||(8437813-8437886)
chr6 (49-164)||(28004628-28004743)
chr6 (41-163)||(9675759-9675874)
chr6 (51-115)||(9829898-9829962)
chr6 (43-118)||(8215204-8215279)
chr6 (44-115)||(31522647-31522717)
chr6 (42-156)||(35003757-35003871)
chr6 (50-95)||(28756663-28756708)
chr6 (60-148)||(8211799-8211887)
chr6 (41-100)||(28596072-28596131)
chr6 (41-115)||(7343281-7343354)
chr6 (77-163)||(9675753-9675839)
chr6 (41-151)||(30531181-30531291)
chr6 (50-112)||(35003765-35003827)
chr6 (69-166)||(1986192-1986289)
chr6 (50-91)||(7549781-7549822)
chr6 (83-156)||(8437813-8437886)
chr6 (69-154)||(9829891-9829976)
chr6 (105-166)||(28756645-28756706)
chr6 (41-137)||(2282415-2282511)
chr6 (50-150)||(13422138-13422238)
chr6 (100-164)||(28596065-28596129)
chr6 (61-164)||(33822305-33822408)
chr6 (108-162)||(7343305-7343359)
chr6 (49-91)||(7549847-7549889)
chr6 (60-90)||(8830900-8830930)
chr6 (49-166)||(13320800-13320915)
[»] scaffold2113 (2 HSPs)
scaffold2113 (49-163)||(568-681)
scaffold2113 (41-152)||(574-684)
[»] chr4 (40 HSPs)
chr4 (49-158)||(12276816-12276925)
chr4 (44-113)||(55827282-55827351)
chr4 (41-165)||(12276817-12276941)
chr4 (41-113)||(55762905-55762977)
chr4 (51-115)||(54235261-54235325)
chr4 (45-164)||(24980615-24980734)
chr4 (105-163)||(2734170-2734228)
chr4 (54-115)||(3249695-3249756)
chr4 (50-106)||(30848640-30848696)
chr4 (42-93)||(2734177-2734228)
chr4 (35-118)||(4479612-4479695)
chr4 (42-93)||(48514596-48514647)
chr4 (107-170)||(55762927-55762990)
chr4 (49-163)||(4423154-4423268)
chr4 (52-154)||(54009984-54010085)
chr4 (96-170)||(55827293-55827367)
chr4 (41-165)||(44124228-44124352)
chr4 (49-152)||(2871503-2871606)
chr4 (49-156)||(4423147-4423254)
chr4 (40-112)||(21606029-21606103)
chr4 (105-163)||(40391247-40391305)
chr4 (49-106)||(18995179-18995236)
chr4 (50-163)||(44124222-44124335)
chr4 (44-153)||(54009984-54010092)
chr4 (48-165)||(54235226-54235343)
chr4 (42-90)||(23151594-23151642)
chr4 (49-166)||(30848595-30848714)
chr4 (57-100)||(18508871-18508914)
chr4 (44-103)||(33759429-33759487)
chr4 (108-154)||(33759442-33759487)
chr4 (49-95)||(40391261-40391307)
chr4 (49-90)||(2871562-2871603)
chr4 (83-144)||(3249695-3249756)
chr4 (105-166)||(12220830-12220891)
chr4 (50-163)||(24980631-24980744)
chr4 (54-163)||(28346186-28346295)
chr4 (62-130)||(41615703-41615772)
chr4 (77-157)||(4479609-4479689)
chr4 (80-112)||(5496893-5496925)
chr4 (75-163)||(7270229-7270316)
[»] scaffold0097 (1 HSPs)
scaffold0097 (61-115)||(37928-37982)
[»] scaffold0027 (1 HSPs)
scaffold0027 (49-115)||(13179-13245)
[»] scaffold0034 (2 HSPs)
scaffold0034 (50-137)||(94952-95039)
scaffold0034 (42-136)||(94964-95058)
[»] scaffold0126 (2 HSPs)
scaffold0126 (49-111)||(28172-28234)
scaffold0126 (100-164)||(28158-28221)
[»] scaffold0072 (1 HSPs)
scaffold0072 (50-148)||(20368-20466)
[»] scaffold0067 (1 HSPs)
scaffold0067 (42-115)||(35938-36011)
[»] scaffold0650 (1 HSPs)
scaffold0650 (69-133)||(20-84)
[»] scaffold0233 (1 HSPs)
scaffold0233 (41-111)||(18291-18360)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 3739932 - 3739805
Alignment:
Q  36 tactactccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaattt 135  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3739932 tactactccgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaattt 3739833  T
Q  136 ttacttatattttgggacggagggagta 163  Q
    || |||||||||||||||||||||||||    
T  3739832 ttgcttatattttgggacggagggagta 3739805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 3739811 - 3739927
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||  ||| |||  |||||||||||||| ||| |||||||||||||| ||    
T  3739811 ctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgct 3739910  T
Q  141 tatattttgggacggag 157  Q
    |||||||| ||||||||    
T  3739911 tatattttaggacggag 3739927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 29855063 - 29855169
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||| ||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||| ||||||||||    
T  29855063 caaaatataagcgaaaattaatcaacaaaagttgatgtatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatatttt 29855162  T
Q  149 gggacgg 155  Q
     ||||||    
T  29855163 aggacgg 29855169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 19758390 - 19758261
Alignment:
Q  35 gtactactccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgtt-gaccaat 133  Q
    ||||| |||||||  |||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||| || || ||||  ||  ||    
T  19758390 gtacttctccgtcataaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttgtaccaaatacatcaacttacgttatactcat 19758291  T
Q  134 ttttacttatattttgggacggagggagta 163  Q
    |||| |||| ||||||||||||| ||||||    
T  19758290 ttttgcttacattttgggacggaaggagta 19758261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 30693332 - 30693455
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||||  |||||||||  |||||||| ||||||||| |||||||||||| || |||||||||||||||||||| | |||  |||||   |||||||||    
T  30693332 ctccgtccgaaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcatttttact 30693431  T
Q  141 tatattttgggacggagggagtat 164  Q
    || ||||||  ||||| |||||||    
T  30693432 tacattttgaaacggaaggagtat 30693455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 47543600 - 47543719
Alignment:
Q  45 gtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttata 144  Q
    |||| |||||||||  |||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || || || |     |||||  |||| |    
T  47543600 gtcttaaaatataataaaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaatacatcaacttacgctatttcattttggcttaca 47543699  T
Q  145 ttttgggacggagggagtat 164  Q
    ||||||||||||||||||||    
T  47543700 ttttgggacggagggagtat 47543719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 29855162 - 29855060
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||  ||| |||  ||||||||||| || ||| |||||  ||||||  |||||||||||    
T  29855162 aaaatataagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttg 29855063  T
Q  150 gga 152  Q
    |||    
T  29855062 gga 29855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 37919026 - 37918905
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    ||||||| ||| ||||||| |||||| |||||||||||| ||||||||||||| ||||||| || ||||||||| || ||  |||||   |||||| |||    
T  37919026 tccgtcttaaactataagcgaaaatttgtcaacaaaagtgaatgtatttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgctt 37918927  T
Q  142 atattttgggacggagggagta 163  Q
    | |||||||||||  |||||||    
T  37918926 acattttgggacgatgggagta 37918905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 3694092 - 3693991
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||| | |||||||||||||||| |||||||||||| || ||||||||||  |||||||| || ||  ||||||  |||| |||||| |||||    
T  3694092 caaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgactcatttctacttacatttt 3693993  T
Q  149 gg 150  Q
    ||    
T  3693992 gg 3693991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 6061569 - 6061496
Alignment:
Q  45 gtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    |||||||||| | |||||| |||||||||||||| |||||||||||| || ||||||||||| | |||||||||    
T  6061569 gtctcaaaatgtgagcaaatattggtcaacaaaaattaatgtatttgttttaaaatttgtactagatacattaa 6061496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 30295920 - 30295993
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||||||||||| |||  ||||||||||||||||||||| |||||||| || |||| || ||||||||||||    
T  30295920 tccgtctcaaaatacaagttaaaattggtcaacaaaagttattgtatttgattcaaaaattataccaaatacat 30295993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 5056399 - 5056333
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||||||| |||||||||||||| |||| |||| ||||||| || |||||||||| |||||||||    
T  5056399 caaaatataaacaaaaattggtcaataaaaattaacgtatttgattcaaaatttgtatcaaatacat 5056333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 30693447 - 30693325
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    ||||| ||||||| |||| ||||||   |||||| ||  | |||||||||||  ||| |||| | |||||||||||| ||| ||||| ||||||||| ||    
T  30693447 tccgtttcaaaatgtaagtaaaaatgaatcaacataatatgatgtatttggtacaaattttgaatcaaatacattaatttttgttgatcaatttttattt 30693348  T
Q  142 atattttgggacggagggagtat 164  Q
    ||||||| |||||||||| ||||    
T  30693347 atattttcggacggagggtgtat 30693325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 35310357 - 35310304
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaattt 102  Q
    ||||||||||| |||||||||||||||||| |||||||||||| || |||||||    
T  35310357 caaaatataagtaaaaattggtcaacaaaaattaatgtatttgatttaaaattt 35310304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 24024028 - 24023960
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    |||||||||  |||||||| ||||||||||||||||||| ||||| |||||||| | || |||||||||    
T  24024028 aaaatataacaaaaaattgatcaacaaaagttaatgtatgtggttcaaaatttgcatcagatacattaa 24023960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 35310315 - 35310359
Alignment:
Q  107 caaatacattaaatttcgttgaccaatttttacttatattttggg 151  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||    
T  35310315 caaatacattaatttttgttgaccaatttttacttatattttggg 35310359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 47543676 - 47543590
Alignment:
Q  77 aagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagta 163  Q
    ||||| |||||||||||  ||| |||| ||||||| |||||| ||| ||||||||||||||  |||||||||  ||| |||||||||    
T  47543676 aagttgatgtatttggtacaaattttgaaccaaattcattaatttttgttgaccaattttttattatattttaagacagagggagta 47543590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 19758335 - 19758384
Alignment:
Q  108 aaatacattaaatttcgttgaccaatttttacttatattttgggacggag 157  Q
    ||||||||||| ||| |||||||||||||||||||||||||  |||||||    
T  19758335 aaatacattaacttttgttgaccaatttttacttatattttatgacggag 19758384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 24023959 - 24024048
Alignment:
Q  79 gttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtatttgt 168  Q
    |||||||||| || |  ||| |||| |||| ||||||||| ||| ||||| ||||||||  ||||||||| ||||||| |||||||||||    
T  24023959 gttaatgtatctgatgcaaattttgaaccacatacattaacttttgttgatcaattttttgttatattttaggacggatggagtatttgt 24024048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 29846738 - 29846621
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||| |||||| ||||||| | || |||||||||| |||| ||||||| |||  |||| || |  ||  ||||||| | |||||||||||||||    
T  29846738 caaaatataaacaaaaaatggtcaatataaattaatgtattcggttcaaaatttatactgaatatatcagcttatgttgacccaattttacttatatttt 29846639  T
Q  149 gggacggagggagtattt 166  Q
     | |||||||||| ||||    
T  29846638 agaacggagggagaattt 29846621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 38067215 - 38067260
Alignment:
Q  125 ttgaccaatttttacttatattttgggacggagggagtatttgtta 170  Q
    ||||||||||||| |||||||||||||| |||||||||||| ||||    
T  38067215 ttgaccaatttttccttatattttgggagggagggagtattcgtta 38067260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 3694050 - 3694106
Alignment:
Q  107 caaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagta 163  Q
    |||||||||||| ||| |||||||||||| ||||||||||||||  |||||| ||||    
T  3694050 caaatacattaatttttgttgaccaatttctacttatattttggagcggaggaagta 3694106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 5056319 - 5056409
Alignment:
Q  69 gtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggaggg 159  Q
    ||||||| ||||| ||||||||| |  ||| |||| | ||||||| |||| |||  |||||||||||||  |||||||||||||| |||||    
T  5056319 gtcaacataagttgatgtatttgatacaaattttgaatcaaatacgttaatttttattgaccaatttttgtttatattttgggacagaggg 5056409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 15343219 - 15343293
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||| |||||| ||||  |||||||||||||||||||| |||  ||||| ||||||| |||||  ||||||||    
T  15343219 ctccgtttcaaaacataaataaaaattggtcaacaaaagtcaataaatttgattaaaaaattgtattaaatacat 15343293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 48051004 - 48050938
Alignment:
Q  63 aaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgac 129  Q
    |||||||||||| |||||| |||||||||||| | ||| || |||||||||||| | ||| ||||||    
T  48051004 aaattggtcaactaaagttgatgtatttggttcataatgtggaccaaatacatttacttttgttgac 48050938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 30295993 - 30295912
Alignment:
Q  83 atgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtat 164  Q
    |||||||||||  ||  |||| | |||||||| ||| ||| ||||||||||||| |||| ||||||| |||||| |||||||    
T  30295993 atgtatttggtataatttttgaatcaaatacaataacttttgttgaccaattttaacttgtattttgagacggaaggagtat 30295912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 53)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 31469063 - 31469192
Alignment:
Q  36 tactactccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaattt 135  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31469063 tactactccgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaattt 31469162  T
Q  136 ttacttatattttgggacggagggagtatt 165  Q
    || |||||||||||||||||| ||| ||||    
T  31469163 ttgcttatattttgggacggatggaatatt 31469192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 944769 - 944892
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    ||||| ||||||||||||||||||| | |||| |||||||||||||||| ||| |||||||||||||||||||| || ||  |||||| |||||||||||    
T  944769 tccgtttcaaaatataagcaaaaatcgatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatttttactt 944868  T
Q  142 atattttgggacggagggagtatt 165  Q
    | |||||| |||||||||||||||    
T  944869 acattttgagacggagggagtatt 944892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 31469183 - 31469068
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||| |  ||| |||  |||||||||||||| ||| |||||||||||||| |||    
T  31469183 tccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgctt 31469084  T
Q  142 atattttgggacggag 157  Q
    ||||||||||||||||    
T  31469083 atattttgggacggag 31469068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 10459271 - 10459385
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || || ||| || ||  |||||||||| ||| |||| |||||    
T  10459271 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacatttt 10459370  T
Q  149 gggacggagggagta 163  Q
    |||||||||||||||    
T  10459371 gggacggagggagta 10459385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 10459379 - 10459251
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||| |||||| |||||||| ||||||||||| ||||| ||| || || |  ||| |||| |||||||||||||| ||| |||||||||||||| ||    
T  10459379 ctccgtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatttttgct 10459280  T
Q  141 tatattttgggacggagggagtatttgtt 169  Q
    |||||||||||| ||||||||||||||||    
T  10459279 tatattttgggaaggagggagtatttgtt 10459251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 41374534 - 41374645
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| |||||||||||  || |||| ||||| |||||||||||  ||| |||| | |||||||||||| |||||||||| ||||||||||||||||||    
T  41374534 caaaatgtaagcaaaaatgagtgaacacaagttgatgtatttggtataaactttgaatcaaatacattaactttcgttgactaatttttacttatatttt 41374633  T
Q  149 gggacggaggga 160  Q
    | ||||||||||    
T  41374634 gagacggaggga 41374645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 16564384 - 16564494
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||||||||||||||||||| ||||| |||| |||  |||||| |||||||||||||||||||| || ||  ||||||  ||||||||||| ||||||    
T  16564384 aaaatataagcaaaaattggtctacaaacgttagtgt--ttggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttg 16564481  T
Q  150 ggacggagggagt 162  Q
    ||||||| |||||    
T  16564482 ggacggaaggagt 16564494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 16180540 - 16180432
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| ||   ||||||| || ||  |||||| ||||||| |||| |||||    
T  16180540 caaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacatttt 16180441  T
Q  149 gggacggag 157  Q
    |||||||||    
T  16180440 gggacggag 16180432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 38935467 - 38935351
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||||||| ||||||||  ||||||||||||||||||||| ||| ||||| |||| ||||||||| || ||  ||||||  |||||| |||||||||||    
T  38935467 aaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttg 38935368  T
Q  150 ggacggagggagtattt 166  Q
    |||| ||| ||||||||    
T  38935367 ggacagagtgagtattt 38935351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 43398943 - 43398831
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| ||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||| || ||   |||||| ||||||||||| |||||    
T  43398943 caaaatctaaacaaaaatttgttaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacatttt 43398844  T
Q  149 gggacggagggag 161  Q
     | || |||||||    
T  43398843 agaacagagggag 43398831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 17437239 - 17437166
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaataca 114  Q
    ||||||| |||||||||| |||||||| |||||||||| ||||||||||| ||| |||||||||||||||||||    
T  17437239 ctccgtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaataca 17437166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 2949039 - 2949151
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||||||||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||  |  || |||||| || ||  ||||||| |||||||||    
T  2949039 ctccgtctcaaaatgtaagcaaaaattggttaacaaaagctaatgtattttgttcaaaattaatgtcatatacatcaatttatgttgacctatttttact 2949138  T
Q  141 tatattttgggac 153  Q
    || ||||||||||    
T  2949139 tacattttgggac 2949151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 19924309 - 19924420
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| |||| |||| || ||||| |||||||||||||| ||||| |||||||||||||||||||| || || |||||||| |   ||||||| | |||    
T  19924309 caaaatgtaagtaaaagttagtcaataaaagttaatgtatatggttcaaaatttgtaccaaatacatcaacttacgttgaccca---ttacttacaattt 19924405  T
Q  149 gggacggagggagta 163  Q
    |||||||||||||||    
T  19924406 gggacggagggagta 19924420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 41374642 - 41374518
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||||||| || ||| ||| |||||||||||| || ||  ||| ||  |||||| ||    
T  41374642 ctccgtctcaaaatataagtaaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttttgct 41374543  T
Q  141 tatattttgggacggagggagtatt 165  Q
    || ||||||| ||| | ||||||||    
T  41374542 tacattttggaacgtaaggagtatt 41374518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 16180432 - 16180543
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||| |||||| |||||||||||| ||||||| || || |||||||   |  ||| |||| |||||||||||||| ||| ||||||||| |||||||    
T  16180432 ctccgtcccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgaccaaattttact 16180531  T
Q  141 tatattttggga 152  Q
    ||||||||||||    
T  16180532 tatattttggga 16180543  T

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Target: chr2; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 944884 - 944776
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||||||||||| |||| ||||||| ||||||| ||||| |||||||||||  ||| |||| || ||||||||||| |||  |||| | |||||| ||    
T  944884 ctccgtctcaaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaacttttattgatcgatttttgct 944785  T
Q  141 tatattttg 149  Q
    |||||||||    
T  944784 tatattttg 944776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 4225087 - 4224983
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttat 143  Q
    |||| |||||||||| ||||| || ||||||||||||||  ||||||| || ||||||| ||||| |||||| || ||  ||||||||| ||||||||||    
T  4225087 cgtcacaaaatataaacaaaatttagtcaacaaaagttatcgtatttgattcaaaatttataccagatacatcaatttatgttgaccaacttttacttat 4224988  T
Q  144 atttt 148  Q
    |||||    
T  4224987 atttt 4224983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 2884262 - 2884333
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatt 121  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||| ||||||| || |||||| ||||||||    
T  2884262 aaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaatttatatcaaatatattaaatt 2884333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 7932743 - 7932814
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||| || || ||||||    
T  7932743 cgtcttaaaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacat 7932814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 41912182 - 41912075
Alignment:
Q  50 aaaatataagcaaaaa-ttggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||||||| ||| ||||||||| ||||||||| ||||| |||||||||||||  || ||||| ||  ||||||  |||||||||| ||||||    
T  41912182 aaaatataagcaaaaaattgttcaacaaaaattaatgtatctggttcaaaatttgtaccagctagattaacttatgttgacttatttttacttgtatttt 41912083  T
Q  149 gggacgga 156  Q
     |||||||    
T  41912082 aggacgga 41912075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 38935359 - 38935484
Alignment:
Q  40 actccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttac 139  Q
    |||| ||| ||||||||||||||||||  ||||||| ||||| ||||||||| |  | | |||| || ||||||||||| ||| |||||  |||||||      
T  38935359 actctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttgagtaatttttgt 38935458  T
Q  140 ttatattttgggacggagggagtatt 165  Q
    ||||||||| ||||||| ||||||||    
T  38935459 ttatatttttggacggatggagtatt 38935484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 2884310 - 2884246
Alignment:
Q  100 tttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtat 164  Q
    |||| |||||||||||||| ||| |||||| |||||||||||||||||| ||||||| |||||||    
T  2884310 tttgaaccaaatacattaatttttgttgacaaatttttacttatattttaggacggatggagtat 2884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 17437166 - 17437246
Alignment:
Q  84 tgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtat 164  Q
    ||||||||||  ||| |||| || ||||||||||| ||| |||||| |||||||  |||||||||||||||||||||||||    
T  17437166 tgtatttggtacaaattttgaactaaatacattaatttttgttgacaaatttttgtttatattttgggacggagggagtat 17437246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 24037682 - 24037575
Alignment:
Q  56 taagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacgg 155  Q
    ||||||||||| |||| ||| ||||| |||||||| ||| ||||||||||||||||| || || ||  ||||||  |||||| |||| ||||| ||||||    
T  24037682 taagcaaaaatgggtcgacataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacattttaggacgg 24037583  T
Q  156 agggagta 163  Q
    | ||||||    
T  24037582 atggagta 24037575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 29291177 - 29291119
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaa 99  Q
    ||||||| |||||| |||||||||||||||||| |||||||||| ||||||||| ||||    
T  29291177 ctccgtcccaaaatgtaagcaaaaattggtcaataaaagttaatatatttggttcaaaa 29291119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 35693934 - 35693992
Alignment:
Q  60 caaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    |||||||||||||| |||| ||||||||||||||| |||||| ||| ||||||||||||    
T  35693934 caaaaattggtcaataaaaattaatgtatttggtttaaaattagtatcaaatacattaa 35693992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 30517873 - 30517959
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||| ||| |||||||||| ||| |||||||| ||  |||| | |||||||||||| ||| |||||| |||||||||||||||||||    
T  30517873 aaaaatcggtaaacaaaagttgatgcatttggttcaa--tttggatcaaatacattaatttttgttgacaaatttttacttatattttg 30517959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 33829389 - 33829450
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgta 105  Q
    |||| |||||||||| ||||||||||||||||||| ||||| ||||||||  ||||||||||    
T  33829389 cgtcccaaaatataaacaaaaattggtcaacaaaaattaatatatttggtacaaaatttgta 33829450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 35311189 - 35311309
Alignment:
Q  48 tcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgac-caatttttacttatatt 146  Q
    ||||||| ||||||||||| |||||||| ||||| || ||| | ||  ||| |||| |||||||||||||| ||| ||||||  ||||||| |||| |||    
T  35311189 tcaaaatgtaagcaaaaatgggtcaacataagtt-atatatcttgtacaaattttgaaccaaatacattaacttttgttgactaaattttttcttacatt 35311287  T
Q  147 ttgggacggagggagtatttgt 168  Q
    ||| || |||||||||||||||    
T  35311288 ttgtgaaggagggagtatttgt 35311309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 43042271 - 43042170
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| |||||||||||  || |||||||||| |||||| || |  ||| |||| ||| |||||||||||||| ||||| | ||||||||||| |||||    
T  43042271 caaaatgtaagcaaaaatgagtaaacaaaagttgatgtatctgatataaattttgaaccgaatacattaaattttgttgatcgatttttacttacatttt 43042172  T
Q  149 gg 150  Q
    ||    
T  43042171 gg 43042170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 11386318 - 11386414
Alignment:
Q  53 atataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||| ||||||||| ||||||||| ||||| |||||  || |||||||||| ||||||||| || ||  ||||| ||| |||| |||||||||||    
T  11386318 atataaacaaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg 11386414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 29291120 - 29291188
Alignment:
Q  100 tttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtatttgt 168  Q
    |||| |||||||| ||||| |||  ||||||||||||| |||| |||||||||||||||||||| ||||    
T  29291120 tttgaaccaaatatattaacttttattgaccaatttttgcttacattttgggacggagggagtaattgt 29291188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 33829443 - 33829383
Alignment:
Q  100 tttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggaggga 160  Q
    ||||||||||||| ||||| ||| ||||||||||||||  ||||||||||||||| |||||    
T  33829443 tttgtaccaaatatattaatttttgttgaccaatttttgtttatattttgggacgtaggga 33829383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 13724136 - 13724199
Alignment:
Q  68 ggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgacca 131  Q
    |||||||||||||| ||||||||||||||||| ||| |||| |||||| || ||| ||||||||    
T  13724136 ggtcaacaaaagttgatgtatttggttaaaaaattggaccagatacatcaacttttgttgacca 13724199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 14781966 - 14781903
Alignment:
Q  108 aaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtatttgttag 171  Q
    ||||||||||| ||||||| | ||||||||||||||||||| |||||| | |||||||| ||||    
T  14781966 aaatacattaactttcgttaatcaatttttacttatattttaggacggtgagagtattttttag 14781903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 43398844 - 43398947
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||| |||| |||||| |||||| | ||||| |||||||||||  ||| |||| |||||||||||||| ||| ||| || |||||||  ||| ||||||    
T  43398844 aaaatgtaagtaaaaatgggtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaacttttgttaacaaatttttgtttagattttg 43398943  T
Q  150 ggac 153  Q
    ||||    
T  43398944 ggac 43398947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 10814868 - 10814961
Alignment:
Q  51 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattt 147  Q
    |||||||| ||||||||||||||  |||||  ||||||||| || ||| |||  |||||||||||   ||||| ||||||||||||| |||||||||    
T  10814868 aaatataaacaaaaattggtcaaacaaagtggatgtatttgattcaaattttagaccaaatacat---atttctttgaccaatttttgcttatattt 10814961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 18007592 - 18007506
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattt 147  Q
    |||| |||||||| |||| |||| |||||||||  ||||||||||||||||| || || |||| |||| ||||||||  ||||||||    
T  18007592 aaaagttggtcaaaaaaaattaacgtatttggtccaaaatttgtaccaaatatatcaactttctttgatcaatttttgtttatattt 18007506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 35311290 - 35311232
Alignment:
Q  49 caaaatataagcaaaaattg-gtcaacaaaagttaatgtatttggttaaaaatttgtac 106  Q
    |||||| |||| |||||||  |||||||||||||||||||||||||| |||||||||||    
T  35311290 caaaatgtaagaaaaaatttagtcaacaaaagttaatgtatttggttcaaaatttgtac 35311232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 44726886 - 44726824
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaata 112  Q
    |||||||||| |||||||| ||||||||| ||||||||||| ||| ||||||| || ||||||    
T  44726886 aaaatataagaaaaaattgatcaacaaaaattaatgtatttagtttaaaatttatatcaaata 44726824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 15660755 - 15660702
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttg 103  Q
    ||||||||||||||||||| |||||| || |||||||||||| || ||||||||    
T  15660755 aaaatataagcaaaaattgatcaacacaaattaatgtatttgattcaaaatttg 15660702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 11386415 - 11386292
Alignment:
Q  48 tcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact--tatat 145  Q
    ||||||||||||||||| ||| |||||| ||||| ||||||||| |  ||| |||| |  ||||| ||||| ||| ||||| ||||||||  |  |||||    
T  11386415 tcaaaatataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatcaatttttgtttatatat 11386316  T
Q  146 tttgggacggagggagtatttgtt 169  Q
    ||| |||||| ||||||| |||||    
T  11386315 tttaggacggtgggagtacttgtt 11386292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 41099030 - 41099090
Alignment:
Q  96 aaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacgga 156  Q
    ||||||||||||||||||||||| ||  ||||||| |||||| |||| ||||||| |||||    
T  41099030 aaaatttgtaccaaatacattaacttatgttgacccatttttgcttacattttggaacgga 41099090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 41099083 - 41099039
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggt 93  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||    
T  41099083 caaaatgtaagcaaaaatgggtcaacataagttaatgtatttggt 41099039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 4592447 - 4592510
Alignment:
Q  52 aatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||||| |||||| | |||||||||| |||||||||||| ||  ||||||||| |||||||||    
T  4592447 aatataaacaaaaaattgtcaacaaaaattaatgtatttgattttaaatttgtatcaaatacat 4592510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 16564488 - 16564376
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    |||||| |||||| |||| ||||||  ||||||| ||||| |||||||||||  ||| |||| |||||  ||| |||  || || ||||||||||| |||    
T  16564488 tccgtcccaaaatgtaagtaaaaatgagtcaacataagttgatgtatttggtacaaattttgaaccaa--acactaacgtttgtagaccaatttttgctt 16564391  T
Q  142 atattttgggacgga 156  Q
    ||||||| |||||||    
T  16564390 atattttaggacgga 16564376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 25090017 - 25089955
Alignment:
Q  51 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaataca 114  Q
    |||||||||||||||||||| ||||||| || || |||||| || |||||||||| ||||||||    
T  25090017 aaatataagcaaaaattggt-aacaaaacttcatatatttgcttcaaaatttgtatcaaataca 25089955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 30517960 - 30517917
Alignment:
Q  48 tcaaaatataagcaaaaattggtcaacaaaagttaatgtatttg 91  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||    
T  30517960 tcaaaatataagtaaaaatttgtcaacaaaaattaatgtatttg 30517917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 40823637 - 40823562
Alignment:
Q  46 tctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatt 121  Q
    |||||||||||||| |||||||| |||| | |  || |||||||||||| ||||||| || ||||||||| |||||    
T  40823637 tctcaaaatataagtaaaaattgatcaagagacatttatgtatttggtttaaaatttatatcaaatacatcaaatt 40823562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 19924390 - 19924293
Alignment:
Q  68 ggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtattt 166  Q
    |||||||  ||||| |||||||||||  ||| |||| |||| ||||||||| |||  ||||| || ||||||||| ||||||| |||| ||||||||||    
T  19924390 ggtcaacgtaagttgatgtatttggtacaaattttgaaccatatacattaacttttattgactaacttttacttacattttggaacgg-gggagtattt 19924293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 11686169 - 11686234
Alignment:
Q  66 ttggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgacca 131  Q
    ||||||||| |||||| || ||||||||| | ||| || |||||| ||||||||||| ||||||||    
T  11686169 ttggtcaactaaagttgatatatttggttcataatgtggaccaaaaacattaaattttgttgacca 11686234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 11714907 - 11714842
Alignment:
Q  66 ttggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgacca 131  Q
    ||||||||| |||||| || ||||||||| | ||| || |||||| ||||||||||| ||||||||    
T  11714907 ttggtcaactaaagttgatatatttggttcataatgtggaccaaaaacattaaattttgttgacca 11714842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 24037590 - 24037706
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||| |||||||||||  ||||||| ||||| || ||||||||  ||| |||| || |||||||| || ||  || |||| |||||| ||||  ||||     
T  24037590 aaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaatacatcaacttatgtcgacccatttttgcttacttttta 24037689  T
Q  150 ggacggagggagtattt 166  Q
    ||||||||| |||||||    
T  24037690 ggacggaggaagtattt 24037706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 55)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 39030554 - 39030682
Alignment:
Q  35 gtactactccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatt 134  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  39030554 gtactactccgttctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatt 39030653  T
Q  135 tttacttatattttgggacggagggagta 163  Q
    ||| |||||||||||||| ||||||||||    
T  39030654 tttgcttatattttgggatggagggagta 39030682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 33670039 - 33669918
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    |||||| |||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||| ||  ||||||| |||||| |||    
T  33670039 tccgtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgctt 33669940  T
Q  142 atattttgggacggagggagta 163  Q
    | ||||||||| ||| ||||||    
T  33669939 acattttgggatggatggagta 33669918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 39030668 - 39030560
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||| |||  |||||||||||||| ||| |||||||||||||| ||||||||||    
T  39030668 caaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatatttt 39030569  T
Q  149 gggacggag 157  Q
     | ||||||    
T  39030568 agaacggag 39030560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 34252714 - 34252837
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | ||| || ||| || ||  ||| ||| |||||| ||    
T  34252714 ctccgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccatttttgct 34252813  T
Q  141 tatattttgggacggagggagtat 164  Q
    || |||||||||||||||||||||    
T  34252814 tacattttgggacggagggagtat 34252837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 42324989 - 42324870
Alignment:
Q  45 gtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttata 144  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| || ||   |||||||||||| | |||||    
T  42324989 gtctcaaaatataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgaccaattttaatttata 42324890  T
Q  145 ttttgggacggagggagtat 164  Q
    |||| | || ||||||||||    
T  42324889 ttttagcactgagggagtat 42324870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 34252830 - 34252706
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||| |||||| ||||||||||| ||| |||| ||||| ||| || |||   ||| |||| |||||||||||||| ||| |||||||||||||| ||    
T  34252830 ctccgtcccaaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgttgaccaatttttgct 34252731  T
Q  141 tatattttgggacggagggagtatt 165  Q
    || ||||||||||||||||||||||    
T  34252730 tacattttgggacggagggagtatt 34252706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 33669932 - 33670049
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| ||||||||||| |||||||| |||||| ||||| ||||  ||| |||  |||||||||||||| |||  ||||||||||||| |||| |||||    
T  33669932 caaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgcttacatttt 33670031  T
Q  149 gggacggagggagtattt 166  Q
    |||||||| |||||||||    
T  33670032 gggacggatggagtattt 33670049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 2424543 - 2424429
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||| ||||| |||||||||||| | |||||||||||||||||||| ||||||||||||| |||||| |  ||  ||| || ||||||| ||||||||||    
T  2424543 caaattataaacaaaaattggtcgataaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatatttt 2424444  T
Q  149 gggacggagggagta 163  Q
     | ||||||||||||    
T  2424443 agcacggagggagta 2424429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 9956611 - 9956489
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||| |||||| |||| |||||||||| |||||||||||||||||||| || ||||||| || || |||||| ||  |  ||||||| |||||||||    
T  9956611 ctccgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttgacccatttttact 9956512  T
Q  141 tatattttgggacggagggagta 163  Q
    || ||||||||| ||| ||||||    
T  9956511 tacattttgggatggatggagta 9956489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 504130 - 504219
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    ||||||||||||||||| ||||||||||| |||||  |||||||| | |||||||| |||||||||||| ||| ||||||||| ||||||||    
T  504130 aaaatataagcaaaaatcggtcaacaaaaattaat--atttggttcagaatttgtatcaaatacattaatttttgttgaccaacttttactt 504219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 38958148 - 38958052
Alignment:
Q  67 tggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagta 163  Q
    |||||||||  |||| |||||||||||  |||||||| |||||||||||||| ||| ||| | ||||||||||||||||||||| ||||||| ||||    
T  38958148 tggtcaacatgagttgatgtatttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatattttggaacggaggaagta 38958052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 2884046 - 2884132
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||| |||| |||| |||||||||||| || ||||||||||  |||||||||||||||  ||||||||||||||||||||||||    
T  2884046 aaaaattgatcaataaaa-ttaatgtatttgatttaaaatttgtattaaatacattaaattttattgaccaatttttacttatatttt 2884132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 17556055 - 17555944
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaa-gttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactta 142  Q
    ||||| |||||||||| |||||||||| ||||||| |||||||||| ||||| ||||||| || |||||| || || || |||||||  |||||||||||    
T  17556055 cgtcttaaaatataagtaaaaattggtgaacaaaaagttaatgtatgtggttcaaaatttatatcaaatatatcaacttacgttgactcatttttactta 17555956  T
Q  143 tattttgggacg 154  Q
    ||||||| ||||    
T  17555955 tattttgagacg 17555944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 38958066 - 38958132
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||    
T  38958066 caaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaatacat 38958132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 26835334 - 26835273
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaat 111  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  26835334 aaaatataaacaaaaagtggtcaacaaaagttaatatatttggttaaaaatttgtatcaaat 26835273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 9956503 - 9956615
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| |||| |||||| |||||||| | ||| |||||| || |  ||| |||| | |||||||||||| ||| ||| ||||||||||||||| |||||    
T  9956503 caaaatgtaagtaaaaatgggtcaacatatgttgatgtatctgttataaattttgaatcaaatacattaacttttgttaaccaatttttacttacatttt 9956602  T
Q  149 gggacggagggag 161  Q
    |||||||||||||    
T  9956603 gggacggagggag 9956615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 14646475 - 14646368
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||| |||||||||||| ||||||| | || |||| ||||||||| || || ||||||||||| ||||||||||| ||   |||||  |||||||||    
T  14646475 ctccgtcccaaaatataagcgaaaattgataaataaaaattaatgtatatgattcaaaatttgtactaaatacattaatttatattgacttatttttact 14646376  T
Q  141 tatatttt 148  Q
    ||||||||    
T  14646375 tatatttt 14646368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 968387 - 968273
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||| ||||||  |||||||||| ||||| ||||| ||| |||||||||||||||||||| || ||   |||||| | ||||||||| |||||    
T  968387 caaaatataagtaaaaatgagtcaacaaaaattaatatatttagttcaaaatttgtaccaaatacatcaacttaaattgacccacttttacttacatttt 968288  T
Q  149 gggacggagggagta 163  Q
    |  |||||| |||||    
T  968287 gaaacggagagagta 968273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 30293382 - 30293481
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||||||| |||| ||| ||||||||||| |||||||||| || ||||||| || ||||||||| ||  |  ||||||  ||||||||||||||||||    
T  30293382 aaaatataagtaaaatttgatcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttg 30293481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 33498353 - 33498432
Alignment:
Q  36 tactactccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||| |||||||  ||||||||||||||| |||| |||||||| | ||| ||||||||| ||||||||||| ||||||||    
T  33498353 tactcctccgtcctaaaatataagcaaaagttggccaacaaaaatcaatatatttggttcaaaatttgtacaaaatacat 33498432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 42324898 - 42324985
Alignment:
Q  62 aaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||||||||| | || || |||||||||||  ||| |||  | |||||||||||| ||| ||||||||||||||||||||||||||    
T  42324898 aaaattggtcaatataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaatttttacttatattttg 42324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 2424444 - 2424558
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||||||||||||||| || |||| ||| | |||||| ||||  ||| |||| |||||||||||||| |||  | |||||||||||  ||||| ||||    
T  2424444 aaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaacttttatcgaccaatttttgtttataatttg 2424543  T
Q  150 ggacggagggagtat 164  Q
    ||| |||| ||||||    
T  2424544 ggatggagagagtat 2424558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 15119303 - 15119401
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||||||||| ||||| |||| |||||||||||| || ||||||||||  ||||| ||||| ||   || ||||||||||  |||||||||    
T  15119303 aaaatataagcaaaaattagtcaataaaacttaatgtatttgattcaaaatttgtattaaatatattaacttatattaaccaatttttgtttatatttt 15119401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 26730147 - 26730097
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaat 111  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| |||||    
T  26730147 aaaaattggttaacaaaagttaatgtatttgattaaaaatttgtatcaaat 26730097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 5727714 - 5727834
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    |||||| |||||| |||| ||||||||||||| |||| ||||| || |||||| ||||||||||||| |||||| || ||    ||||| ||||||||||    
T  5727714 tccgtcccaaaatgtaagtaaaaattggtcaataaaaattaatata-ttggtttaaaatttgtaccagatacatcaacttattgtgacctatttttactt 5727812  T
Q  142 atattttgggacggagggagta 163  Q
    | |||||| ||| || ||||||    
T  5727813 acattttgagacagatggagta 5727834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 16500564 - 16500677
Alignment:
Q  51 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgg 150  Q
    |||| ||||||||||||| ||||||||| |||||||| |||||| |||||||   ||| |||||| || ||  ||||   ||||||||||||||||||      
T  16500564 aaatgtaagcaaaaattgttcaacaaaaattaatgtaattggttcaaaatttaatccagatacatcaatttatgttgtttaatttttacttatattttaa 16500663  T
Q  151 gacggagggagtat 164  Q
    |||||| |||||||    
T  16500664 gacggatggagtat 16500677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 20185416 - 20185352
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||| ||||| ||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||    
T  20185416 aaaatgtaagctaaaattggttaacaaaa-ttaatgtatttggttcaaaatttgtacaaaatacat 20185352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 26746299 - 26746239
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaat 111  Q
    ||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||| |||||    
T  26746299 aaaatataagcaaaaattgatcaacaaa-gttaatttatttagttaaaaatttgtatcaaat 26746239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 42708588 - 42708648
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaa 110  Q
    |||||||| |||||||||  ||||||||||||||||||||| ||| ||||||| |||||||    
T  42708588 aaaatatacgcaaaaattaatcaacaaaagttaatgtatttagttgaaaatttataccaaa 42708648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 17555939 - 17556049
Alignment:
Q  39 tactccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa-atttcgttgaccaattttt 137  Q
    |||| |||||||||||||||| ||||||  ||||||  ||||| || |||||| |  ||| |||| |||| |||||||||  ||| ||| ||||||||||    
T  17555939 tacttcgtctcaaaatataagtaaaaatgagtcaacgtaagttgatatatttgatataaattttgaaccacatacattaactttttgttcaccaattttt 17556038  T
Q  138 acttatatttt 148  Q
    |||||||||||    
T  17556039 acttatatttt 17556049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 37040136 - 37040221
Alignment:
Q  77 aagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagta 163  Q
    ||||||||||||||| || ||||||||||||  |||||| || ||  ||| ||| ||||||||||||||||| ||| ||||||||||    
T  37040136 aagttaatgtatttgatttaaaatttgtacctcatacatcaacttatgtt-acccatttttacttatattttaggatggagggagta 37040221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 40898482 - 40898535
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggtt 94  Q
    |||| ||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  40898482 ctccatctcaaaatataatcaaaaattggtcaataaaaattattgtatttggtt 40898535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 968279 - 968387
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||| ||||||| |||| |||| | ||||||   ||||| |||||||||||  ||| |||| || ||||| ||||| ||| ||||||  |||||||||    
T  968279 ctccgtttcaaaatgtaagtaaaagtgggtcaatttaagttgatgtatttggtacaaattttgaactaaatatattaatttttgttgactcatttttact 968378  T
Q  141 tatattttg 149  Q
    |||||||||    
T  968379 tatattttg 968387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 17234640 - 17234568
Alignment:
Q  46 tctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    |||||||||| ||||  |||||||| || |||| ||||| ||||| ||| |||||||||| ||||||||||||    
T  17234640 tctcaaaataaaagcggaaattggtaaataaaaattaatatattttgtttaaaatttgtagcaaatacattaa 17234568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 28024007 - 28023959
Alignment:
Q  70 tcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    |||| ||||||||||||||||| || ||||||||||| |||||||||||    
T  28024007 tcaataaaagttaatgtatttgattcaaaatttgtacaaaatacattaa 28023959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 30293482 - 30293382
Alignment:
Q  48 tcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattt 147  Q
    |||||||||||| ||||||  ||||||| | ||| ||||||||| |  ||| |||| | |||||||||| | ||| ||||| ||| ||||||||||||||    
T  30293482 tcaaaatataagtaaaaatgagtcaacatatgttgatgtatttgatataaattttgaatcaaatacattgacttttgttgatcaaattttacttatattt 30293383  T
Q  148 t 148  Q
    |    
T  30293382 t 30293382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 5727824 - 5727714
Alignment:
Q  45 gtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttata 144  Q
    |||||||||| |||| |||||| |||||  | ||||| |||||| ||||  ||| |||  ||||| || ||||| |||  |||||||||||||||||| |    
T  5727824 gtctcaaaatgtaagtaaaaataggtcacaataagttgatgtatctggtacaaattttaaaccaa-tatattaatttttattgaccaatttttacttaca 5727726  T
Q  145 ttttgggacgga 156  Q
    ||||||||||||    
T  5727725 ttttgggacgga 5727714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 12619729 - 12619682
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttg 91  Q
    ||||||||||||||||||||||| | |||||| ||||| |||||||||    
T  12619729 cgtctcaaaatataagcaaaaatggatcaacataagttgatgtatttg 12619682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 29960521 - 29960470
Alignment:
Q  43 ccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggtt 94  Q
    ||||| |||||| ||| |||||||| | ||||||||||||||||||||||||    
T  29960521 ccgtcccaaaatgtaaacaaaaattagacaacaaaagttaatgtatttggtt 29960470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 11507888 - 11507922
Alignment:
Q  62 aaaattggtcaacaaaagttaatgtatttggttaa 96  Q
    ||||||||||||||||||||||||||| |||||||    
T  11507888 aaaattggtcaacaaaagttaatgtatctggttaa 11507922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 11515259 - 11515293
Alignment:
Q  62 aaaattggtcaacaaaagttaatgtatttggttaa 96  Q
    ||||||||||||||||||||||||||| |||||||    
T  11515259 aaaattggtcaacaaaagttaatgtatctggttaa 11515293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 11522661 - 11522695
Alignment:
Q  62 aaaattggtcaacaaaagttaatgtatttggttaa 96  Q
    ||||||||||||||||||||||||||| |||||||    
T  11522661 aaaattggtcaacaaaagttaatgtatctggttaa 11522695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 11530073 - 11530107
Alignment:
Q  62 aaaattggtcaacaaaagttaatgtatttggttaa 96  Q
    ||||||||||||||||||||||||||| |||||||    
T  11530073 aaaattggtcaacaaaagttaatgtatctggttaa 11530107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 15119401 - 15119303
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||| ||||||||||| || | |||||||| |||||  |  ||| |||| | |||||||||||| |||  ||||| ||||||| ||||||||||    
T  15119401 aaaatataaacaaaaattggttaatataagttaatatatttaatacaaattttgaatcaaatacattaagttttattgactaatttttgcttatatttt 15119303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 25467103 - 25467225
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||||||||||| ||||||||||| | | |||| ||||| ||||||  | |  ||| |||| |||| ||||||||| |||  | || |||||||| ||    
T  25467103 ctccgtctcaaaatgtaagcaaaaatggattaacataagttgatgtatccgatataaattttgaaccacatacattaacttttatcgatcaatttttcct 25467202  T
Q  141 tatattttgggacggagggagta 163  Q
    || |||||||||  |||||||||    
T  25467203 tagattttgggatagagggagta 25467225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 37040074 - 37040120
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtattt 90  Q
    ||||| ||||| ||| |||||||||||||||| ||||||||||||||    
T  37040074 cgtctgaaaatgtaaacaaaaattggtcaacagaagttaatgtattt 37040120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 3549585 - 3549642
Alignment:
Q  72 aacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgac 129  Q
    |||||||||| ||||||| ||||||||||||  |||| ||||||||| ||| ||||||    
T  3549585 aacaaaagttgatgtattcggttaaaaatttagaccagatacattaatttttgttgac 3549642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 504215 - 504130
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||| ||||||||||||| |||||||||||| |  ||| | || |||||||  ||||| ||| ||||||| |||||| ||||||||||    
T  504215 aaaagttggtcaacaaaaattaatgtatttgatacaaattctgaaccaaat--attaatttttgttgaccgatttttgcttatatttt 504130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 2884132 - 2884092
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtattt 90  Q
    |||||||||| ||||||||||||| |||| |||||||||||    
T  2884132 aaaatataagtaaaaattggtcaataaaatttaatgtattt 2884092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 4576877 - 4576941
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtac 106  Q
    |||||| ||||||||||||||| ||| ||| ||| ||||||||||||  |||| ||||| |||||    
T  4576877 tccgtcccaaaatataagcaaatatttgtcgacagaagttaatgtatgcggttcaaaatctgtac 4576941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 6022035 - 6021979
Alignment:
Q  62 aaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    ||||||| ||| |||||||||||||||||  || ||||||| || ||||||||||||    
T  6022035 aaaattgatcagcaaaagttaatgtatttaatttaaaatttatatcaaatacattaa 6021979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 14646368 - 14646484
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||||||| ||||||  ||||| | || ||||||||||| ||  ||| |||| | || ||||||||| |||  || | |||||||  |||||||||||    
T  14646368 aaaatataagtaaaaataagtcaatataaattaatgtatttagtacaaattttgaatcatatacattaatttttatttatcaattttcgcttatattttg 14646467  T
Q  150 ggacggagggagtattt 166  Q
    |||||||| || |||||    
T  14646468 ggacggagagaatattt 14646484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 25467211 - 25467091
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| |||| |||||||| || | |||||||||||||| ||||| ||||||| || |  |||||| || ||  ||| | | |||||| |||| |||||    
T  25467211 caaaatctaaggaaaaattgatcgataaaagttaatgtatgtggttcaaaatttatatcggatacatcaacttatgttaatccatttttgcttacatttt 25467112  T
Q  149 gggacggagggagtatttgtt 169  Q
    | ||||||| ||||| |||||    
T  25467111 gagacggagagagtaattgtt 25467091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 36858074 - 36858022
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggtt 94  Q
    |||||| |||||| ||||||||||||||| |  |||||||||| |||||||||    
T  36858074 tccgtcccaaaatgtaagcaaaaattggttagtaaaagttaatatatttggtt 36858022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 39014998 - 39015122
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||| | ||||| ||| |||||||| |||||| ||| ||||| ||||||||| |||  |||||||  | |||| || || | |||| | |||||||||    
T  39014998 ctccgttttaaaatgtaaacaaaaattagtcaactaaaattaatatatttggttcaaaccttgtaccggacacatcaacttacattgatccatttttact 39015097  T
Q  141 tatattttgggacggagggagtatt 165  Q
    || ||||| |||| ||| |||||||    
T  39015098 tacattttaggactgagagagtatt 39015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 16866501 - 16866390
Alignment:
Q  54 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggac 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  |||| |||||||| ||||||||||||||     
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttgggat 16866402  T
Q  154 ggagggagtatt 165  Q
    ||||||||||||    
T  16866401 ggagggagtatt 16866390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 3719986 - 3719867
Alignment:
Q  45 gtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttata 144  Q
    |||||||||| ||||||||||||| |||||| ||||| |||||| | || ||||||||| |||||||||| ||| ||| |||||||||||||||| ||||    
T  3719986 gtctcaaaatgtaagcaaaaattgatcaacataagttgatgtatctcgtaaaaaatttgaaccaaatacactaactttagttgaccaatttttacatata 3719887  T
Q  145 ttttgggacggagggagtat 164  Q
    |||||||| |||| ||||||    
T  3719886 ttttgggatggagtgagtat 3719867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 6803303 - 6803376
Alignment:
Q  40 actccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatac 113  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  6803303 actctgtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaatac 6803376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 44816469 - 44816538
Alignment:
Q  46 tctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  44816469 tctcaaaatgtaaacaaaaattggccaacaaaagttaatgtatttggttcaaaatttgtaccaaatacat 44816538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 16866406 - 16866501
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttata 144  Q
    |||||||||||||||||||| |||| ||||||||||||||| |||  ||| |||  |||||||||||||| ||| |||||||||||||| ||||||    
T  16866406 caaaatataagcaaaaattgatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 18732083 - 18731990
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacg 154  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| || ||  ||||| | |||||| ||||||||||||||||    
T  18732083 aaaaattggtcaataaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttgggacg 18731990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 5026145 - 5026256
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||||||||||||| ||||||||||||| ||||| ||  |||||||||||||||||||| || ||    ||||   ||||||||||||||||    
T  5026145 caaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacatcaactt---atgactcgtttttacttatatttt 5026241  T
Q  149 gggacggagggagta 163  Q
    | || ||||||||||    
T  5026242 gagatggagggagta 5026256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 30794447 - 30794555
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||||||| |||| ||||||||||||| ||||| |||||| || ||||||||||||||||||||| | ||  ||||| | | ||||||||| ||||||    
T  30794447 aaaatataagtaaaatttggtcaacaaaatttaatatatttgattcaaaatttgtaccaaatacattcatttatgttgatccaattttacttacattttg 30794546  T
Q  150 ggacggagg 158  Q
     ||||||||    
T  30794547 agacggagg 30794555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 3769866 - 3769743
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||| |||||||||||||  |||||||| |  |||||||||||||||||| ||| ||||||||||  |||||||| || ||  ||||||  |||||||||    
T  3769866 ctccatctcaaaatataaataaaaattgatatacaaaagttaatgtatttagtttaaaatttgtattaaatacatcaacttgtgttgactcatttttact 3769767  T
Q  141 tatattttgggacggagggagtat 164  Q
    |  ||||||| ||||| |||||||    
T  3769766 tgcattttggaacggatggagtat 3769743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 27147665 - 27147590
Alignment:
Q  86 tatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggag 161  Q
    ||||| ||| |||||||||| |||||||||||| ||| |||||| |||||||||||||||||| | ||||||||||    
T  27147665 tatttagtttaaaatttgtatcaaatacattaacttttgttgactaatttttacttatattttagaacggagggag 27147590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 30794554 - 30794447
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||||||||||| |||| |||| | | |||||| || | ||||||||||||  ||| |||| | |||||| ||||||||| ||||||||| |||||||    
T  30794554 ctccgtctcaaaatgtaagtaaaattggatcaacataaatgaatgtatttggtacaaattttgaatcaaatatattaaattttgttgaccaaattttact 30794455  T
Q  141 tatatttt 148  Q
    ||||||||    
T  30794454 tatatttt 30794447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 14773476 - 14773581
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaa-gttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||| |||| |||||||||| ||||||| |||||||||| ||||| ||||||| || || |||||| || || |||||||  |||||||||||||||||    
T  14773476 aaaatgtaagtaaaaattggtgaacaaaaagttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatatttt 14773575  T
Q  149 gggacg 154  Q
    | ||||    
T  14773576 gagacg 14773581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 15223928 - 15224033
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaa-gttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||| |||| |||||||||| ||||||| |||||||||| ||||| ||||||| || || |||||| || || |||||||  |||||||||||||||||    
T  15223928 aaaatgtaagtaaaaattggtgaacaaaaagttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatatttt 15224027  T
Q  149 gggacg 154  Q
    | ||||    
T  15224028 gagacg 15224033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 18731990 - 18732101
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttat 143  Q
    |||| |||||||||||||||||| | |||||| || || |||||| ||||  ||| |||| |||||||||||||| |||  ||||||||||||| ||||     
T  18731990 cgtcccaaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaattttt-cttac 18732088  T
Q  144 attttgggacgga 156  Q
    ||||| |||||||    
T  18732089 attttaggacgga 18732101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 47967911 - 47967987
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    |||||| |||||||||| ||||| | ||||||||||| || |||||||| ||| ||||||||||| |||||||||||    
T  47967911 tccgtcccaaaatataaacaaaattcggtcaacaaaaatttatgtatttagtttaaaatttgtactaaatacattaa 47967987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 3719873 - 3719982
Alignment:
Q  40 actccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttac 139  Q
    ||||| || ||||||||| | |||||||||||||| ||||||| ||||||||||| ||| ||| ||| | |||||| || ||  ||||| |||||||| |    
T  3719873 actccatcccaaaatatatgtaaaaattggtcaactaaagttagtgtatttggttcaaattttttacgagatacatcaacttatgttgatcaatttttgc 3719972  T
Q  140 ttatattttg 149  Q
    ||| ||||||    
T  3719973 ttacattttg 3719982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 23971288 - 23971224
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||||||| |||||||||||||||||| | ||| ||||| ||| ||||||||||||||||||||    
T  23971288 aaaatataag-aaaaattggtcaacaaaaataaatatatttagttcaaaatttgtaccaaatacat 23971224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 1554948 - 1554883
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtac 106  Q
    |||||||  ||||||||| |||||||||||||| ||||||| | |||||| ||| |||||||||||    
T  1554948 ctccgtcctaaaatataaacaaaaattggtcaataaaagttcacgtattttgtttaaaatttgtac 1554883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 6803353 - 6803296
Alignment:
Q  108 aaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtatt 165  Q
    ||||||||||| ||| ||||||||| |||| ||||||||||||||| ||| |||||||    
T  6803353 aaatacattaacttttgttgaccaaattttgcttatattttgggacagagtgagtatt 6803296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 27147603 - 27147644
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttg 91  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  27147603 aaaatataagtaaaaattagtcaacaaaagttaatgtatttg 27147644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 5026217 - 5026141
Alignment:
Q  77 aagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggac 153  Q
    ||||| |||||||||||  ||| |||| || ||||| ||||| ||| ||| |||||||||| |||||||||||||||    
T  5026217 aagttgatgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggac 5026141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 14773581 - 14773461
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa-atttcgttgaccaatttttactta 142  Q
    |||||||||||||||| ||||||  ||||||  ||||| |||||| || |  ||| |||| |||| |||||||||  ||| ||| |||||||||||||||    
T  14773581 cgtctcaaaatataagtaaaaatgagtcaacgtaagttgatgtatctgatataaattttgaaccacatacattaactttttgttcaccaatttttactta 14773482  T
Q  143 tattttgggacggagggagta 163  Q
     ||||| ||||| || |||||    
T  14773481 cattttaggacgaagagagta 14773461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 15224033 - 15223913
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa-atttcgttgaccaatttttactta 142  Q
    |||||||||||||||| ||||||  ||||||  ||||| |||||| || |  ||| |||| |||| |||||||||  ||| ||| |||||||||||||||    
T  15224033 cgtctcaaaatataagtaaaaatgagtcaacgtaagttgatgtatctgatataaattttgaaccacatacattaactttttgttcaccaatttttactta 15223934  T
Q  143 tattttgggacggagggagta 163  Q
     ||||| ||||| || |||||    
T  15223933 cattttaggacgaagagagta 15223913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 23971191 - 23971306
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||||||||||||||   |||| | ||||| |||||||||||  ||| |||| || ||||| ||| | ||| |||||||||||||| ||||||||||     
T  23971191 aaaatataagcaaaaataaatcaatataagttgatgtatttggtacaaattttgaactaaatatatttatttttgttgaccaattttt-cttatatttta 23971289  T
Q  150 ggacggagggagtattt 166  Q
    | | ||| |||||||||    
T  23971290 gaaaggacggagtattt 23971306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 32652490 - 32652406
Alignment:
Q  70 tcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacg 154  Q
    |||| |||| ||||||||||||||| ||| |||||||||||||||  || ||  ||||||  ||||||||||| |||||| ||||    
T  32652490 tcaataaaaattaatgtatttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttgagacg 32652406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 34515903 - 34515855
Alignment:
Q  56 taagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgt 104  Q
    ||||||||| |||||||| |||||||||||||||| ||| |||||||||    
T  34515903 taagcaaaatttggtcaataaaagttaatgtattttgttcaaaatttgt 34515855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 4259408 - 4259342
Alignment:
Q  52 aatataagcaaaaattggtc-aacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    ||||||||||||||||| || ||||||||||||||||||| ||| ||||||| ||  |||||||||||    
T  4259408 aatataagcaaaaattgatctaacaaaagttaatgtattt-gttcaaaatttatagtaaatacattaa 4259342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 21253168 - 21253129
Alignment:
Q  83 atgtatttggttaaaaatttgtaccaaatacattaaattt 122  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  21253168 atgtatttggttaaaaaattggaccaaatacattaaattt 21253129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 13591060 - 13591027
Alignment:
Q  132 atttttacttatattttgggacggagggagtatt 165  Q
    |||||| |||||||||||||||||||||||||||    
T  13591060 atttttgcttatattttgggacggagggagtatt 13591027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 24710765 - 24710704
Alignment:
Q  68 ggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgac 129  Q
    |||||||||||||| ||||||||| |  | ||| || |||||||||||||||||| ||||||    
T  24710765 ggtcaacaaaagttgatgtatttgatctacaatatgaaccaaatacattaaatttagttgac 24710704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 47967997 - 47967901
Alignment:
Q  70 tcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtattt 166  Q
    |||||| |||||||||||||| ||  ||| |||  || |||||||| || ||| ||||||| | ||||  |||||||||||||||||  ||||||||    
T  47967997 tcaacataagttaatgtatttagtacaaattttaaactaaatacataaatttttgttgaccgaattttgtttatattttgggacggatagagtattt 47967901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 15164776 - 15164695
Alignment:
Q  161 gtatttgttagctatagggtggctacttgccacctttcttatgcttcatcctcattgtttggtgtttgttttggcctttgct 242  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15164776 gtattcgttagctatagggtggctacttgccacctttcttatgcttcatcctcattgtttggtgtttgttttggcttttgct 15164695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 11114253 - 11114349
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggag 157  Q
    |||| ||| ||||||||| ||||||||||  ||| ||||||| |||||||||||| || ||  ||||| ||||||||||||||||||||||||||||    
T  11114253 aaaagttgatcaacaaaaattaatgtattcagtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttgggacggag 11114349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 29111069 - 29110997
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacatt 116  Q
    ||||||||||||||| ||||||||| ||||| ||| ||||||||||||||| ||||||| |||||||||||||    
T  29111069 cgtctcaaaatataaacaaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaatacatt 29110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 35901139 - 35901039
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||||||||||||||| |||||||||||||||||||||| || | ||||||||||| || ||||| || ||  ||||||  |||||| |||||||||||    
T  35901139 aaaatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttg 35901040  T
Q  150 g 150  Q
    |    
T  35901039 g 35901039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 8777767 - 8777889
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||| ||  ||||||||||| ||  ||| | | ||||||||||    
T  8777767 tccgtcttaaaatataaacaaaaattgatcaacaaaagttaatatatttggttcaaaatttatattaaatacattaacttatgttaatccatttttactt 8777866  T
Q  142 atattttgggacggagggagtat 164  Q
    |  |||| ||||| || ||||||    
T  8777867 aattttttggacgaagagagtat 8777889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 7974891 - 7974778
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||| |||||||||||||| ||||||||||||||||   | |||||||||||||||||| | || ||  ||||||| ||| ||  |||||||||    
T  7974891 caaaatataaacaaaaattggtcaataaaagttaatgtatttttgtcaaaatttgtaccaaatacgtcaatttatgttgacccattcttttttatatttt 7974792  T
Q  149 gggacggagggagt 162  Q
     ||| |||||||||    
T  7974791 tggaaggagggagt 7974778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 13209977 - 13210035
Alignment:
Q  57 aagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||    
T  13209977 aagcaaaaattgatcaacaaaagttaatgtatttggttcaaaatttgtatcagatacat 13210035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 9548158 - 9548038
Alignment:
Q  45 gtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttata 144  Q
    |||| ||||||||| ||||||||| ||||||||| ||| | ||||||||| ||||||||||| |||||||| || ||  ||||||  |||||| |||  |    
T  9548158 gtcttaaaatataaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcattttt-cttgca 9548060  T
Q  145 ttttgggacggagggagtattt 166  Q
    |||||||||| || ||||||||    
T  9548059 ttttgggacgaagagagtattt 9548038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 29110956 - 29111069
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||||  ||||| ||||||| ||| |||||| | || | ||||||||||||  ||| |||| |||||||||||||| ||||||||| ||||||||  |    
T  29110956 ctccgtcgtaaaatgtaagcaataataggtcaatataaatgaatgtatttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttgtt 29111055  T
Q  141 tatattttgggacg 154  Q
    ||||||||| ||||    
T  29111056 tatattttgagacg 29111069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 35901040 - 35901147
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||||||||||  ||||||| ||||| ||||| || ||  ||| ||||  || |||||||||| ||| ||||||| |||||| ||||||||||    
T  35901040 caaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgagcccaatacattaacttttgttgacctatttttgcttatatttt 35901139  T
Q  149 gggacgga 156  Q
     |||||||    
T  35901140 aggacgga 35901147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 33557879 - 33557781
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||| ||||| |||||||| |||| |||||||||||||||| ||| |||||||||| ||||||||| || ||  ||||| || ||||| |||| |||||    
T  33557879 aaaacataagtaaaaattgatcaataaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttgatcattttttgcttacatttt 33557781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 15114629 - 15114737
Alignment:
Q  56 taagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatt-tcgttgaccaatttttacttatattttgggacg 154  Q
    |||| |||||||||||||||||| |||||||||||| || ||||||||| | |||||| | || || |  |||| |||||||| |||| ||||| ||| |    
T  15114629 taagaaaaaattggtcaacaaaaattaatgtatttgattcaaaatttgttctaaatacgtcaatttatgtttgatcaattttttcttacatttttggatg 15114728  T
Q  155 gagggagta 163  Q
    |||||||||    
T  15114729 gagggagta 15114737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15164810 - 15164774
Alignment:
Q  1 aaatgttggttcttttcttttgcagaataaagaggta 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  15164810 aaatgttggttcttttcttttgcagaataaagaggta 15164774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 33557781 - 33557884
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||| |||||||||| || |||||| ||||| ||||||||| |  ||| |||| || ||||||||||| |||  |||| |||||||||||||| ||||     
T  33557781 aaaatgtaagcaaaaaatgatcaacataagtttatgtatttgatacaaattttgaactaaatacattaacttttattgatcaatttttacttatgtttta 33557880  T
Q  150 ggac 153  Q
    ||||    
T  33557881 ggac 33557884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 29798034 - 29797938
Alignment:
Q  63 aaattggtcaacaaaagttaatgtat---ttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacgga 156  Q
    |||||||||||||||| |||||||||   |||||| |||||||||||||||||||| || ||  ||| ||  |||||| |||| ||||||| |||||    
T  29798034 aaattggtcaacaaaaattaatgtatttgttggttcaaaatttgtaccaaatacataaatttatgttaactcatttttgcttacattttggaacgga 29797938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 11114349 - 11114297
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggt 93  Q
    ||||||| ||||||||||| |||||||| |||||| ||||| |||||||||||    
T  11114349 ctccgtcccaaaatataagtaaaaattgatcaacataagttgatgtatttggt 11114297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 8637235 - 8637334
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||||||||||| | || ||||| |||| || || ||||||||| ||||||||  |||||||||| || |||| |||||  | |||| |||||||||||    
T  8637235 aaaatataagcaatagttagtcaaaaaaaattgatatatttggttcaaaatttggtccaaatacatcaattttctttgactcaattttgcttatattttg 8637334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 15077375 - 15077431
Alignment:
Q  175 tagggtggctacttgccaccttt----cttatgcttcatcctcattgtttggtgttt 227  Q
    ||||||||||||||||||||||     ||||||||| ||||||||||||||||||||    
T  15077375 tagggtggctacttgccaccttagttccttatgcttgatcctcattgtttggtgttt 15077431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 42704504 - 42704543
Alignment:
Q  108 aaatacattaaatttcgttgaccaatttttacttatattt 147  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  42704504 aaatacatcaaatttctttgaccaatttttacttatattt 42704543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15077333 - 15077369
Alignment:
Q  1 aaatgttggttcttttcttttgcagaataaagaggta 37  Q
    |||||||| || |||||||||||||||||||||||||    
T  15077333 aaatgttgtttattttcttttgcagaataaagaggta 15077369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 44080739 - 44080779
Alignment:
Q  108 aaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||| ||| ||||| |||||||||||||||||||    
T  44080739 aaatacattaatttttgttgatcaatttttacttatatttt 44080779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 44080779 - 44080739
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtattt 90  Q
    |||||||||| |||||||| ||||||||| |||||||||||    
T  44080779 aaaatataagtaaaaattgatcaacaaaaattaatgtattt 44080739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 32221583 - 32221468
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||  | ||| |||||||| ||    
T  32221583 ctccgtatcaaaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgct 32221484  T
Q  141 tatattttgggacgga 156  Q
    || |||||||||||||    
T  32221483 tacattttgggacgga 32221468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 46829041 - 46829162
Alignment:
Q  36 tactactccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaattt 135  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||| ||||||||||||     |||  || |||||||||||| ||| ||||||||||||    
T  46829041 tactattccgtcctaaaatataagcaaaaattggtcaacaaaagtcaatgtatttggt-----att--tatcaaatacattaacttttgttgaccaattt 46829133  T
Q  136 ttacttatattttgggacggagggagtat 164  Q
    || |||||||||| ||||| |||||||||    
T  46829134 ttgcttatattttaggacgaagggagtat 46829162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 46829146 - 46829047
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||       ||||||||||||| | ||| |||||||||||||| ||||||||||     
T  46829146 aaaatataagcaaaaattggtcaacaaaagttaatgtatttgataaa-------taccaaatacattgacttttgttgaccaatttttgcttatatttta 46829054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 31280161 - 31280276
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    |||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||  ||||| | |||||| ||||  |||||    
T  31280161 aaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttttg 31280260  T
Q  150 ggacggagggagtatt 165  Q
    ||| ||| | ||||||    
T  31280261 ggatggaagaagtatt 31280276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 32221468 - 32221588
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    |||||| |||||| ||||||||||||| ||| || || || |||||||||||  ||| |||| |||||||||||||| ||| |||||| ||||||| |||    
T  32221468 tccgtcccaaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgctt 32221567  T
Q  142 atattttgggacggagggagt 162  Q
    | ||||||  |||||||||||    
T  32221568 acattttgatacggagggagt 32221588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 40905808 - 40905873
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||    
T  40905808 aaaatgtaagcaaaaattggtcaacaaaagttaatttatttggttcaaaatttataccagatacat 40905873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 47783083 - 47783192
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| |||| ||||||||||||| |||||||||||||||||||| |||||||||| || ||||||    ||  ||||||  |||||| ||||||||||    
T  47783083 caaaatgtaagtaaaaattggtcaaaaaaagttaatgtatttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatatttt 47783182  T
Q  149 gggacggagg 158  Q
    || |||||||    
T  47783183 ggaacggagg 47783192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 26914554 - 26914439
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| ||||||||||||| ||||||||| ||||||||| ||||| ||||||| ||| |||||||| || ||  |||| || |||||| |||| |||||    
T  26914554 caaaatgtaagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttgtcc-atttttgcttacatttt 26914456  T
Q  149 gggacggagggagtatt 165  Q
    ||||| ||| |||||||    
T  26914455 gggacagagtgagtatt 26914439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 31280253 - 31280161
Alignment:
Q  56 taagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||| |||||| | |||||| || ||||||||| ||||  ||| |||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  31280253 taaggaaaaatggatcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaatttttacttatatttt 31280161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 47783183 - 47783069
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||||||||||  ||||||| |||   |||||| || |  ||| |||| |||||||||||||| |||  |||||||||||||||||| |||||    
T  47783183 caaaatataagcaaaaatgagtcaacataagccgatgtatctgatacaaattttgaaccaaatacattaactttttttgaccaatttttacttacatttt 47783084  T
Q  149 gggacggagggagta 163  Q
    || | ||| ||||||    
T  47783083 ggaatggaaggagta 47783069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 26439321 - 26439428
Alignment:
Q  48 tcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattt 147  Q
    |||||||||||||||| ||| | ||| |||| |||||||||||| || |||||||||| |||||||||        ||||||| ||||||  ||||||||    
T  26439321 tcaaaatataagcaaatattagccaaaaaaa-ttaatgtatttgattcaaaatttgtatcaaatacat--------gttgacccatttttctttatattt 26439411  T
Q  148 tgggacggagggagtat 164  Q
    ||||||| |||||||||    
T  26439412 tgggacgaagggagtat 26439428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 22756982 - 22756913
Alignment:
Q  45 gtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||||| |||||| ||||||| | |||||||||||||| ||||||| || ||||||| ||||||||||||    
T  22756982 gtctcaatatataaacaaaaat-gatcaacaaaagttaacgtatttgattcaaaatttataccaaatacat 22756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 30443757 - 30443829
Alignment:
Q  63 aaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaattt 135  Q
    |||| ||||||||||||||||||||||||||  | | | || ||||||||||| || ||| ||||||||||||    
T  30443757 aaatgggtcaacaaaagttaatgtatttggtctatattatgaaccaaatacatcaactttagttgaccaattt 30443829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 30443829 - 30443757
Alignment:
Q  63 aaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaattt 135  Q
    |||||||||||| |||||| |||||||||||| | ||| |  |||||||||||||| ||| ||||||| ||||    
T  30443829 aaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacattaacttttgttgacccattt 30443757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 21383807 - 21383693
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||||| |||||| |||||||||  |||| |||||| || | | | ||||| ||||||||||| || || | | | ||||||||||| |||||    
T  21383807 caaaatataagcagaaattgatcaacaaaaactaatatatttgatttaca-tatgtactaaatacattaacttacgctaaaccatttttacttacatttt 21383709  T
Q  149 gggacggagggagtat 164  Q
    |  |||||||||||||    
T  21383708 gaaacggagggagtat 21383693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 29637538 - 29637439
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||| | ||||| ||||||| || |||  |||||||||| |||||||||| |||||| ||||| ||  ||||||  |||||| |||| |||||    
T  29637538 caaaatataagtagaaattagtcaacataaattacagtatttggttcaaaatttgtatcaaatatattaatttatgttgacttattttttcttacatttt 29637439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 23314774 - 23314684
Alignment:
Q  54 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttata 144  Q
    ||||||||||| | ||||||  |||| |||||||||||||||||| |||| || || || || || |||| |||||||| |||| ||||||    
T  23314774 tataagcaaaagtaggtcaaagaaaggtaatgtatttggttaaaattttggacaaagtatatcaactttctttgaccaacttttgcttata 23314684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 15282718 - 15282629
Alignment:
Q  75 aaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtat 164  Q
    ||||||||||||||||| || |||||||||| || || ||| || ||  ||||| | ||||||  |||||||||||||||| || |||||    
T  15282718 aaaagttaatgtatttgatttaaaatttgtatcagattcatcaacttatgttgatccatttttgtttatattttgggacggcggaagtat 15282629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 29637431 - 29637539
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    ||||||| ||||| |||| ||||||  ||||||| || ||||| |||||| |  ||| |||| |||||||||  ||| ||  |||||| ||||| |||||    
T  29637431 tccgtcttaaaatgtaagaaaaaataagtcaacataaattaatatatttgatacaaattttgaaccaaatactgtaatttatgttgactaatttctactt 29637530  T
Q  142 atattttgg 150  Q
    |||||||||    
T  29637531 atattttgg 29637539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 31323819 - 31323933
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| || ||  ||||||| |||||| |||| |||||    
T  31323819 caaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacatttt 31323918  T
Q  149 gggacggagggagta 163  Q
    ||||| |||||||||    
T  31323919 gggacagagggagta 31323933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 28004728 - 28004614
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||  |||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||| |||| || | |||||| |||    
T  28004728 caaaatataagggaaaattagtcaacaaaagttaatgtatttggctcaaaatttgtaccaaatacattaatttttgttggccaaattatgcttatacttt 28004629  T
Q  149 gggacggagggagta 163  Q
    || ||||||||||||    
T  28004628 ggaacggagggagta 28004614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 14446701 - 14446816
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| ||||||||| ||||||||||||||||||||||| | ||| ||||||| ||  | |||||| || || | |||||||||||||||||| |||||    
T  14446701 caaaatgtaagcaaaagttggtcaacaaaagttaatgtatgttgttcaaaatttatattagatacatcaacttacattgaccaatttttacttacatttt 14446800  T
Q  149 gggacggagggagtat 164  Q
    ||||||||||||||||    
T  14446801 gggacggagggagtat 14446816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 2282415 - 2282518
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggaggga 160  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||| || ||  ||| || ||||||| ||||||| |||||||||||| |    
T  2282415 aaaaattggtcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgttaactaatttttgcttatatattgggacggaggaa 2282514  T
Q  161 gtat 164  Q
    ||||    
T  2282515 gtat 2282518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 31323919 - 31323804
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| ||||||||||| |||||||| ||||| |||||| ||||  ||| |||| || ||||||||||| ||| |||||||||||||| |||| |||||    
T  31323919 caaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacatttt 31323820  T
Q  149 gggacggagggagtat 164  Q
    ||| | ||||||||||    
T  31323819 gggtcagagggagtat 31323804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 30531183 - 30531297
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| ||||||||||  |||||||| ||||| |||||||||||| ||| |||||||||||||||| || ||  |||||   |||||| |||| |||||    
T  30531183 caaaatgtaagcaaaaacgggtcaacataagttgatgtatttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacatttt 30531282  T
Q  149 gggacggagggagta 163  Q
    |||||||||||||||    
T  30531283 gggacggagggagta 30531297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 8437886 - 8437813
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||||||||||||||| |||| || |||||||||| |||||||||||| || ||||||||||||||||||||    
T  8437886 tccgtctcaaaatataagtaaaatttagtcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacat 8437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 28004628 - 28004743
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||| |||||||| || |||| |||||||| ||||||||||||||  ||| ||||  ||||||||||||| ||| |||||| ||||||  ||||||||||    
T  28004628 caaagtataagcataatttggccaacaaaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatatttt 28004727  T
Q  149 gggacggagggagtat 164  Q
    |||| ||| |||||||    
T  28004728 gggatggaaggagtat 28004743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 9675759 - 9675874
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||| || ||||  ||| ||||||  ||||||||||| ||       ||||||||||||    
T  9675759 ctccgtctcaaaatgtaagcaaaaattggtcaacataagttgatgcatctggtacaaattttgtattaaatacattaactt-------ccaatttttact 9675851  T
Q  141 tatattttgggacggagggagta 163  Q
    |||||||| ||||||| ||||||    
T  9675852 tatattttaggacggatggagta 9675874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 9829898 - 9829962
Alignment:
Q  51 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||||||| ||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  9829898 aaatataagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacat 9829962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 8215204 - 8215279
Alignment:
Q  43 ccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    |||||||||||||| |  |||||||| |||||||| |||||||||||||||   ||||||||| ||||||||||||    
T  8215204 ccgtctcaaaatattaataaaaattgatcaacaaatgttaatgtatttggtctgaaatttgtatcaaatacattaa 8215279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 31522717 - 31522647
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||| |||||| ||||||||| |||||||||||||||||||| ||||| || ||||||||||||| ||||||    
T  31522717 cgtcccaaaatgtaagcaaaa-ttggtcaacaaaagttaatgcatttgattcaaaatttgtaccagatacat 31522647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 35003871 - 35003757
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttactt 141  Q
    ||||||| ||||| |||||||||||   |||||| ||||| || ||||| ||  ||| |||| | |||||||||||| |||  || ||||||||||||||    
T  35003871 tccgtcttaaaatgtaagcaaaaatgaatcaacataagttgatatattttgtacaaattttgaatcaaatacattaatttttattaaccaatttttactt 35003772  T
Q  142 atattttgggacgga 156  Q
    ||||||| |||||||    
T  35003771 atattttaggacgga 35003757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 28756663 - 28756708
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggtta 95  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  28756663 aaaatataagcaaaatttggtcaacgaaagttaatgtatttggtta 28756708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 8211799 - 8211887
Alignment:
Q  60 caaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||| |||| |||| ||||| ||||||||   |||||||||| ||||||||||| ||  ||||| | |||||||||||||||||    
T  8211799 caaaaattgatcaataaaatttaatatatttggtccgaaatttgtactaaatacattaatttatgttgatctatttttacttatatttt 8211887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 28596072 - 28596131
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 100  Q
    |||||| ||||||| |||| |||||||||||||||||| ||||| ||||||||| |||||    
T  28596072 ctccgtttcaaaatgtaagtaaaaattggtcaacaaaaattaatatatttggttcaaaat 28596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 7343354 - 7343281
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||||  |||||||||| |||||||| ||||||||||||||| |||||  || |||| |||||||||||||||    
T  7343354 ctccgtcctaaaatataagtaaaaattgatcaacaaaagttaatatatttatttcaaaa-ttgtaccaaatacat 7343281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 9675839 - 9675753
Alignment:
Q  77 aagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagta 163  Q
    ||||||||||||||  |  ||||||||||||| || ||| || ||  |||||||||||||| |||| |||||| |||||||||||||    
T  9675839 aagttaatgtatttaatacaaaatttgtaccagatgcatcaacttatgttgaccaatttttgcttacattttgagacggagggagta 9675753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 30531291 - 30531181
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||| |||||| |||||||||||   |||||| ||||| |||||||||||  ||| |||| ||||||||||| || ||  |||||||  ||||| ||    
T  30531291 ctccgtcccaaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaatacatcaacttatgttgacccgtttttgct 30531192  T
Q  141 tatattttggg 151  Q
    || ||||||||    
T  30531191 tacattttggg 30531181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 35003765 - 35003827
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaata 112  Q
    |||||||||| |||||||||| || |||| |||||||||||| || ||||||||||| |||||    
T  35003765 aaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaata 35003827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 1986289 - 1986192
Alignment:
Q  69 gtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtattt 166  Q
    ||||||| |||||||| ||||||||  ||| |||  || |||| |||||| |||  |||||||| ||||||||||||||| |||||| || |||||||    
T  1986289 gtcaacataagttaatatatttggtataaattttaaactaaatgcattaatttttattgaccaacttttacttatattttaggacgggggaagtattt 1986192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 7549781 - 7549822
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttg 91  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  7549781 aaaatataagcaaaaattggtgtacaaaagttaatgtatttg 7549822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 8437813 - 8437886
Alignment:
Q  83 atgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacgga 156  Q
    |||||||||||  ||| |||| | |||||||||||| ||| |||||| || |||||||||||||||| ||||||    
T  8437813 atgtatttggtacaaattttgaatcaaatacattaatttttgttgactaaattttacttatattttgagacgga 8437886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 9829976 - 9829891
Alignment:
Q  69 gtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacg 154  Q
    ||||||| || || |||||||||||  ||| |||  || ||||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  9829976 gtcaacataaattgatgtatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatttagggacg 9829891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 28756706 - 28756645
Alignment:
Q  105 accaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtattt 166  Q
    |||||||||||||| ||||||||||||| |||| |||||||||| ||| ||| | |||||||    
T  28756706 accaaatacattaactttcgttgaccaaattttgcttatatttttggatggaagtagtattt 28756645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 2282511 - 2282415
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaattttt 137  Q
    ||||||| ||| ||||||||||||||| || |||| || || ||||||||| |  ||  |||| || ||||||||||| ||| ||||||||||||||    
T  2282511 ctccgtcccaatatataagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaattttt 2282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 13422138 - 13422238
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||| |||| |||||||| |||| |||| |||||||||||| || ||||||| ||||| ||| ||||| ||  ||| ||| ||||||| ||| ||||||    
T  13422138 aaaatgtaagtaaaaattgctcaataaaaattaatgtatttgatttaaaatttataccagatatattaatttatgttaacctatttttatttacattttg 13422237  T
Q  150 g 150  Q
    |    
T  13422238 g 13422238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 28596129 - 28596065
Alignment:
Q  100 tttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtat 164  Q
    |||| |||||||| ||||| ||| ||||||||||||||||||| ||||||  |||||| ||||||    
T  28596129 tttgaaccaaatatattaatttttgttgaccaatttttacttacattttgaaacggagagagtat 28596065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 33822305 - 33822408
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggaggga 160  Q
    |||||||| | ||||||||||||| ||||| ||| |||||||||| ||||||||| || ||   || | | ||||||||||| |||||| |||| | |||    
T  33822305 aaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaatccatttttacttacattttgagacgaatgga 33822404  T
Q  161 gtat 164  Q
    ||||    
T  33822405 gtat 33822408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 7343305 - 7343359
Alignment:
Q  108 aaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagt 162  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||||| ||||    
T  7343305 aaatatattaacttttgttgatcaatttttacttatattttaggacggagagagt 7343359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 7549889 - 7549847
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttg 91  Q
    ||||||||||||||||||||||  |||||||||||| ||||||    
T  7549889 caaaatataagcaaaaattggtgtacaaaagttaatatatttg 7549847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 8830900 - 8830930
Alignment:
Q  60 caaaaattggtcaacaaaagttaatgtattt 90  Q
    |||||||||||||||||||||||||||||||    
T  8830900 caaaaattggtcaacaaaagttaatgtattt 8830930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 13320915 - 13320800
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||||| |||  |||||| |||||| |||||| ||||  ||| |||  ||||||||||| ||  |||  ||||  |||||| ||||||||||    
T  13320915 caaaatataagcaacaatgagtcaacgaaagttgatgtatctggtctaaattttacaccaaatacatcaatcttc--tgactcatttttgcttatatttt 13320818  T
Q  149 gggacggagggagtattt 166  Q
    |  |||||||||||||||    
T  13320817 gttacggagggagtattt 13320800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 681 - 568
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||  |||||| |||||||||||||| ||||||| ||| ||||||||||||||||| ||||| ||| ||| ||||| |||| |||||| |||    
T  681 caaaatataagtgaaaattagtcaacaaaagttattgtatttagttcaaaatttgtaccaaataaattaacttttgtt-accaaattttgcttatacttt 583  T
Q  149 gggacggagggagta 163  Q
    |||||||||||||||    
T  582 gggacggagggagta 568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 574 - 684
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    ||||||| |||| ||||||||||| ||||| ||||||||||||| ||||||||  ||| |||| || ||||||| ||| ||| |||||| |||||| |||    
T  574 ctccgtcccaaagtataagcaaaatttggt-aacaaaagttaatttatttggtacaaattttgaactaaatacaataacttttgttgactaattttcact 672  T
Q  141 tatattttggga 152  Q
    ||||||||||||    
T  673 tatattttggga 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 12276925 - 12276816
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||||||||| |||||||| ||||| |||||||| ||  ||| |||| | |||||||||||| ||| | |||||||| ||||||||||||||    
T  12276925 caaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgaccaatctttacttatatttt 12276826  T
Q  149 gggacggagg 158  Q
     |||||||||    
T  12276825 aggacggagg 12276816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 55827351 - 55827282
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatac 113  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  55827351 cgtcccaaaatataagcaaaaattggtcaacaaaagttaatatatttggttaaaattttgtagcaaatac 55827282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 12276817 - 12276941
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||||  |||||||||| ||| |||||||| |||||||||||||||||| || ||||||| ||| |||||||| || ||  ||||||| |||||| ||    
T  12276817 ctccgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgct 12276916  T
Q  141 tatattttgggacggagggagtatt 165  Q
    |||||||||| | ||| ||||||||    
T  12276917 tatattttggaatggaaggagtatt 12276941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 55762977 - 55762905
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatac 113  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  55762977 ctccgtcccaaaatataaacaaaaattggtcaacaaaagttaatatatttgattaaaaatttgtagcaaatac 55762905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 54235325 - 54235261
Alignment:
Q  51 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  54235325 aaatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacat 54235261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 24980734 - 24980615
Alignment:
Q  45 gtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttata 144  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||| ||  |||||||||  || |||||| || ||  ||||| | ||||||||||| |    
T  24980734 gtctcaaaatgtaagcaaaaatttgtcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccatttttacttaca 24980635  T
Q  145 ttttgggacggagggagtat 164  Q
    |||| | |||||||||||||    
T  24980634 ttttagaacggagggagtat 24980615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 2734228 - 2734170
Alignment:
Q  105 accaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagta 163  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||||||    
T  2734228 accaaatacattaacttttgttgactaatttttacttatattttgggacggaaggagta 2734170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 3249695 - 3249756
Alignment:
Q  54 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||    
T  3249695 tataagtaaaaattggtcgacaaaagttaatgtatttggttcaaaatttataccagatacat 3249756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 30848696 - 30848640
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtac 106  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  30848696 aaaatgtaagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtac 30848640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 2734177 - 2734228
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggt 93  Q
    |||||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  2734177 tccgtcccaaaatataagtaaaaattagtcaacaaaagttaatgtatttggt 2734228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 4479695 - 4479612
Alignment:
Q  35 gtactactccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaa 118  Q
    ||||| ||||||||||||||  ||| |||||||| ||||||||| ||||| |||||| || ||||||| ||||| |||||||||    
T  4479695 gtacttctccgtctcaaaatgcaagtaaaaattgatcaacaaaaattaatatatttgattcaaaatttataccagatacattaa 4479612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 48514647 - 48514596
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggt 93  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  48514647 tccgtctcacaatataaacaaaaattagtcaacaaaagttaatgtatttggt 48514596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 55762927 - 55762990
Alignment:
Q  107 caaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtatttgtta 170  Q
    |||||| ||||| ||| ||||||||||||||  |||||||||||||||||||||||| ||||||    
T  55762927 caaatatattaacttttgttgaccaatttttgtttatattttgggacggagggagtagttgtta 55762990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 4423154 - 4423268
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||||||||  ||||||| |||| |||| ||||| |||||| || |||||||||||||||||||| || ||   |||| | |||||| |||| |||||    
T  4423154 caaaatataagtgaaaattgatcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacatttt 4423253  T
Q  149 gggacggagggagta 163  Q
    ||||| |||| ||||    
T  4423254 gggacagaggaagta 4423268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 54010085 - 54009984
Alignment:
Q  52 aatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttggg 151  Q
    ||||||||||||||||  | ||||||| |||||||||||| || ||||||| ||||||||| |   | ||  |||||||||||||| |||||||||||||    
T  54010085 aatataagcaaaaatttataaacaaaacttaatgtatttgattcaaaatttataccaaataga-acacttatgttgaccaatttttgcttatattttggg 54009987  T
Q  152 acg 154  Q
    |||    
T  54009986 acg 54009984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 55827293 - 55827367
Alignment:
Q  96 aaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtatttgtta 170  Q
    |||||||  |||||||| ||||| ||| |||||||||||||| |||||||||||||||| | |||||| ||||||    
T  55827293 aaaattttaaccaaatatattaacttttgttgaccaatttttgcttatattttgggacgaatggagtagttgtta 55827367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 44124228 - 44124352
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttact 140  Q
    |||||||  ||||| |||||||||||| | |  ||||||||||| | |||||   |||||||  ||||||| |||||| ||| ||||||||||| |||||    
T  44124228 ctccgtccaaaaatgtaagcaaaaatttgccttcaaaagttaatatttttggacgaaaatttaaaccaaatgcattaacttttgttgaccaattattact 44124327  T
Q  141 tatattttgggacggagggagtatt 165  Q
    || |||||  |||||| ||||||||    
T  44124328 tacattttatgacggatggagtatt 44124352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 2871503 - 2871606
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||||||||  |||||||  || | ||||||| || |||||||| |||||||| ||| |||||||| || ||| ||| ||| |||||| ||||||||||    
T  2871503 caaaatataacaaaaaatttatctataaaagttgatttatttggtcaaaaatttatacaaaatacatcaacttttgtttaccgatttttgcttatatttt 2871602  T
Q  149 ggga 152  Q
    ||||    
T  2871603 ggga 2871606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 4423254 - 4423147
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    |||||| ||||||||||| | |||| | ||||| |||||||||||  ||| |||| | |||||| ||||| |||  |||| ||||||| |||||||||||    
T  4423254 caaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaatcaaatatattaatttttattgatcaattttcacttatatttt 4423155  T
Q  149 gggacgga 156  Q
    || |||||    
T  4423154 ggtacgga 4423147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 21606103 - 21606029
Alignment:
Q  40 actccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggtt--aaaaatttgtaccaaata 112  Q
    |||||||| ||||||||||||||||  |||||| ||||||||||||| | |||||  |||||| |||||||||||    
T  21606103 actccgtcccaaaatataagcaaaatgtggtcagcaaaagttaatgtgtctggttcaaaaaatatgtaccaaata 21606029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 40391305 - 40391247
Alignment:
Q  105 accaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagta 163  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||||| || ||||||    
T  40391305 accaaatacattaatttttgttgatcgatttttacttatattttgggacagaaggagta 40391247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 18995236 - 18995179
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtac 106  Q
    |||||| |||||||| ||| || || |||||||||||||||||||| |||||||||||    
T  18995236 caaaatgtaagcaaacattagttaataaaagttaatgtatttggttcaaaatttgtac 18995179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 44124335 - 44124222
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||| |||| || |||||||||||||||||||||| |||||||| ||| |||   ||||| | ||||| ||| |  | | ||||||| |||| |||||     
T  44124335 aaaatgtaagtaataattggtcaacaaaagttaatgcatttggtttaaattttcgtccaaaaatattaacttttgaaggcaaatttttgcttacattttt 44124236  T
Q  150 ggacggagggagta 163  Q
    ||||||||||||||    
T  44124235 ggacggagggagta 44124222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 54009984 - 54010092
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttat 143  Q
    |||| ||||||||||||||||||||||||||| ||| |  | ||||||||  ||| |||| | |||||||||||| ||| ||| |  ||||||| |||||    
T  54009984 cgtcccaaaatataagcaaaaattggtcaacataag-tgttctatttggtataaattttgaatcaaatacattaagttttgtttataaatttttgcttat 54010082  T
Q  144 attttgggac 153  Q
    ||| ||||||    
T  54010083 attgtgggac 54010092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 54235226 - 54235343
Alignment:
Q  48 tcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattt 147  Q
    ||||||| |||||||||||  ||||| | || || |||||||| ||  ||| |||| |||||||||||||| ||| ||||| ||||||||  ||||||||    
T  54235226 tcaaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T
Q  148 tgggacggagggagtatt 165  Q
      | | ||||||||||||    
T  54235326 aagaatggagggagtatt 54235343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 23151642 - 23151594
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtattt 90  Q
    |||||||||||||||||  |||||||| ||||||||| |||||||||||    
T  23151642 tccgtctcaaaatataaagaaaaattgatcaacaaaaattaatgtattt 23151594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 30848595 - 30848714
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttg--gttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatt 146  Q
    |||||| ||||||||||| | |||||| ||||| |||||| |   ||  ||| |||| || ||||||||||| ||| |||||||||||||| |||| |||    
T  30848595 caaaatgtaagcaaaaatggatcaacataagttgatgtatctaatgtacaaattttgaacaaaatacattaatttttgttgaccaatttttgcttacatt 30848694  T
Q  147 ttgggacggagggagtattt 166  Q
    || | ||||| |||||||||    
T  30848695 ttagaacggatggagtattt 30848714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 18508914 - 18508871
Alignment:
Q  57 aagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 100  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||    
T  18508914 aagcgaaaattggtcaacaaaagttaatgtatttagttcaaaat 18508871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 33759487 - 33759429
Alignment:
Q  44 cgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttg 103  Q
    |||| ||||||||||| |||| ||||||||||||| ||||||||||| ||| ||||||||    
T  33759487 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 33759429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 33759442 - 33759487
Alignment:
Q  108 aaatacattaaatttcgttgaccaatttttacttatattttgggacg 154  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  33759442 aaatacattaatttttgttgaccaa-ttttacttatattttgggacg 33759487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 40391261 - 40391307
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggtta 95  Q
    ||||||||||| |||||| | ||||||||| ||||||||||||||||    
T  40391261 caaaatataagtaaaaatcgatcaacaaaaattaatgtatttggtta 40391307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 2871603 - 2871562
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtattt 90  Q
    |||||||||||||||||| ||| |||||||||| ||||||||    
T  2871603 caaaatataagcaaaaatcggtaaacaaaagttgatgtattt 2871562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 3249756 - 3249695
Alignment:
Q  83 atgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttata 144  Q
    |||||| ||||  ||| |||| |||||||||||||| ||| || ||||||||||||||||||    
T  3249756 atgtatctggtataaattttgaaccaaatacattaacttttgtcgaccaatttttacttata 3249695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 12220891 - 12220830
Alignment:
Q  105 accaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtattt 166  Q
    |||||||||||| | | | ||||||||||||||| ||| ||||||||| |||| ||||||||    
T  12220891 accaaatacattcattcttgttgaccaatttttatttacattttgggatggagagagtattt 12220830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 24980631 - 24980744
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttg 149  Q
    ||||| |||| |||||| | |||||| ||||| |||||| ||    ||| ||||||| ||||||||||| ||| |||||| ||||||| |||| ||||||    
T  24980631 aaaatgtaagtaaaaatggatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaatttttgcttacattttg 24980730  T
Q  150 ggacggagggagta 163  Q
     ||| ||| |||||    
T  24980731 agacagagagagta 24980744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 28346186 - 28346295
Alignment:
Q  54 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggac 153  Q
    ||||||||||||| ||||||  |||||| |||  ||||||| |||||||  || |||||||| || |||| |||||||| |||  ||| || ||||||||    
T  28346186 tataagcaaaaatgggtcaaagaaagttgatgcgtttggttcaaaattttgactaaatacatcaattttctttgaccaaatttcgcttgtaatttgggac 28346285  T
Q  154 ggagggagta 163  Q
     |||| ||||    
T  28346286 agaggaagta 28346295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 41615703 - 41615772
Alignment:
Q  62 aaaattgg-tcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgacc 130  Q
    |||||||| |||||||||||| |||||||| ||||||||||    ||||||||||||| ||| |||||||    
T  41615703 aaaattggatcaacaaaagttgatgtatttagttaaaaattaagtccaaatacattaacttttgttgacc 41615772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 4479609 - 4479689
Alignment:
Q  77 aagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggag 157  Q
    |||||||||||| ||||  ||| |||| | |||||| ||||| ||| ||||| ||||||||||||  |||||| |||||||    
T  4479609 aagttaatgtatctggtataaattttgaatcaaatatattaatttttgttgatcaatttttacttgcattttgagacggag 4479689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 5496925 - 5496893
Alignment:
Q  80 ttaatgtatttggttaaaaatttgtaccaaata 112  Q
    ||||||||||||||| |||||||||||||||||    
T  5496925 ttaatgtatttggttcaaaatttgtaccaaata 5496893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 7270229 - 7270316
Alignment:
Q  75 aaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagta 163  Q
    |||| ||| ||||||||||| |||||||| | |||||||||||| ||| | |||  |||||||| ||||||||| ||| ||| ||||||    
T  7270229 aaaaattagtgtatttggttcaaaatttg-atcaaatacattaatttttgctgattaatttttaattatattttaggatggaaggagta 7270316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 37928 - 37982
Alignment:
Q  61 aaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  37928 aaaaattagtcaacaaaagttaatgtatttggtttaaaatttataccaaatacat 37982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 13179 - 13245
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||| ||||||||||| | ||||||    
T  13179 caaaatgtaagcaaaaatggatcaacaaaagttaatgtatttggtttaaaatttgtacaagatacat 13245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 94952 - 95039
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaattttt 137  Q
    ||||| ||||| ||||||| |||| |||| ||||||||||  ||| |||||||||||||||||||| || ||  ||||||||||||||    
T  94952 aaaatgtaagcgaaaattgatcaataaaaattaatgtattatgttcaaaatttgtaccaaatacatcaacttatgttgaccaattttt 95039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 95058 - 94964
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttt 136  Q
    ||||||| ||||| |||  ||||||||||||||| ||||| |||||||||||  ||| |||| ||  |||||||||| |||  |||| |||||||    
T  95058 tccgtcttaaaatgtaataaaaaattggtcaacataagttgatgtatttggtacaaattttgaacataatacattaatttttattgatcaatttt 94964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 28172 - 28234
Alignment:
Q  49 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaat 111  Q
    ||||||||||  |||||||| | ||||||||||||||||||||||| |||||| |||||||||    
T  28172 caaaatataaataaaaattgattaacaaaagttaatgtatttggttcaaaattcgtaccaaat 28234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 28221 - 28158
Alignment:
Q  100 tttgtaccaaatacattaaatttcgttgaccaatttttacttatattttgggacggagggagtat 164  Q
    |||| |||||||||||||| ||| ||| | ||||||||| ||||||||| ||||||||| |||||    
T  28221 tttgaaccaaatacattaacttttgttaatcaatttttatttatatttt-ggacggaggaagtat 28158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 20466 - 20368
Alignment:
Q  50 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaatttttacttatatttt 148  Q
    ||||| |||||||||||||||||  |||| |||| |||| ||||| ||||||||||  ||||||||||| ||  ||||||  ||||||||||| |||||    
T  20466 aaaatgtaagcaaaaattggtcagtaaaaattaacgtatgtggtttaaaatttgtattaaatacattaatttatgttgacatatttttacttacatttt 20368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 35938 - 36011
Alignment:
Q  42 tccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacat 115  Q
    ||||||| |||||||||  |||||||| |||||||  |||||||||||||||  |||||||||| |||||||||    
T  35938 tccgtcttaaaatataaataaaaattgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacat 36011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 20 - 84
Alignment:
Q  69 gtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaaatttcgttgaccaat 133  Q
    ||||||||||||| ||||||||||||||||||||   |||||||||| || ||| ||||||||||    
T  20 gtcaacaaaagttgatgtatttggttaaaaatttagtccaaatacatcaacttttgttgaccaat 84  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 18360 - 18291
Alignment:
Q  41 ctccgtctcaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaat 111  Q
    |||| ||| ||||||||| ||||||||| ||||||||| ||||| ||||| |||||||||||||| |||||    
T  18360 ctccatcttaaaatataaacaaaaattgatcaacaaaa-ttaatatatttagttaaaaatttgtatcaaat 18291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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