View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_low_26 (Length: 224)
Name: NF9971_low_26
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 40704820 - 40704667
Alignment:
| Q |
53 |
cgaaatcgaattgaattagaaaaccacagttacctcaagcaatagatcaataacacgcttcatctgagcaccaacgggggctttacgtatattattaatc |
152 |
Q |
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| T |
40704820 |
cgaaatcgaattgaattagaaaaccacagttacctcaagcaatagatcaataacacgcttcatctgagcaccaacgggggctttacgtatattattaatc |
40704721 |
T |
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| Q |
153 |
tgctgaagcctctcagtatcacttgagaatttaacaccggttcttgaatttctt |
206 |
Q |
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| T |
40704720 |
tgctgaagcctctcagtatcacttgagaatttaacaccggttcttgaatttctt |
40704667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 206
Target Start/End: Complemental strand, 19056498 - 19056349
Alignment:
| Q |
56 |
aatcgaattgaattagaaaaccacagttacctcaagcaatagatcaataacacgcttcatctgagcaccaacgggggctttacgtatattattaatctgc |
155 |
Q |
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| T |
19056498 |
aatcgaattgaatgtgaaagccaaaattacctcaagcactagatcaataacacgcttcatctgagcaccaacgggggcttt-catatattattaatctgc |
19056400 |
T |
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| Q |
156 |
tgaagcctctcagtatcacttgagaatttaacaccggttcttgaatttctt |
206 |
Q |
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| T |
19056399 |
tgaagcctctcagtattatttgagaattaaacaccagtttttgaatttctt |
19056349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 50806976 - 50807090
Alignment:
| Q |
95 |
tagatcaataacacgcttcatctgagcaccaacgggggctttacgtatatt---attaatctgctgaagcctctcagtatcacttgagaatttaacaccg |
191 |
Q |
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| T |
50806976 |
tagatcaataacacgcttcatctgagcaccaacgggggctttacatatattattattaatctgctgaagcctctcagtatcatttgagaatttaacacca |
50807075 |
T |
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| Q |
192 |
gttcttgaatttctt |
206 |
Q |
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||| ||||||||||| |
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| T |
50807076 |
gtttttgaatttctt |
50807090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 50868901 - 50868787
Alignment:
| Q |
95 |
tagatcaataacacgcttcatctgagcaccaacgggggctttacgtatattatta---atctgctgaagcctctcagtatcacttgagaatttaacaccg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
50868901 |
tagatcaataacacgcttcatctgagcaccaacgggggctttacatatattattattaatctgctgaagcctctcagtatcatttgagaatttaacacca |
50868802 |
T |
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| Q |
192 |
gttcttgaatttctt |
206 |
Q |
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| T |
50868801 |
gtttttgaatttctt |
50868787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 2881036 - 2881112
Alignment:
| Q |
96 |
agatcaataacacgcttcatctgagcaccaacgggggctttacgtatattattaatctgctgaagcctctcagtatc |
172 |
Q |
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|||||||||||||||||||| ||||||||||| || |||||||| ||| ||||||| || ||||| ||||| ||||| |
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| T |
2881036 |
agatcaataacacgcttcatttgagcaccaacaggagctttacgaatactattaatatgttgaagtctctccgtatc |
2881112 |
T |
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