View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_low_3 (Length: 526)
Name: NF9971_low_3
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 17328228 - 17327719
Alignment:
| Q |
1 |
gttttcttcatctcaacattaagaattctctctacaaaaacatctctatttctcaaccttcaaccactttcactaccaggcctattcatcacaaccatcc |
100 |
Q |
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| T |
17328228 |
gttttcttcatctcaacattaagaattctctctacaaaaacatctctttttctcaaccttcaaccactttcactaccaggcttattcatcacaaccatcc |
17328129 |
T |
|
| Q |
101 |
taaacacaataatcatcctcacaataagccttattggaagaatcttaggtggtgctagtttcaacccttcatccacaatttccttctatacattaggact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
17328128 |
taaacacaataatcatcctcacaataagccttattggaagaatcttaggtggtgctagttttaacccttcatccacaatttccttctacacattaggact |
17328029 |
T |
|
| Q |
201 |
aagaccagattcatctcttctatcttttgccataaggtttcctgctcaagcaataggtggagcaattggcatcaaatccatccttcaagttataccaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17328028 |
aagaccagattcatctcttctatcttttgccataaggtttcctgctcaagcaataggtggagctattggcatcaaatccatccttcaagttataccaaca |
17327929 |
T |
|
| Q |
301 |
gaatacaaagacatggtgaaaggtccttctttgaaggttgatttgcatacaggtgctattgctgaaggggttttgacttttactcataactttgttattc |
400 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17327928 |
gaatacaaagacatggtgaaaggtccatctttgaaggttgatttgcatacaggtgctattgctgaaggggttttgacttttactcataactttgttattc |
17327829 |
T |
|
| Q |
401 |
ttcttgttatgcttaagggccctaaaaatccttggttcaaggtttatttgctttctgtggctactttggttttggttataattggttctggttatactgg |
500 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||| |
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| T |
17327828 |
ttcttgttatgcttaagggtcctaaaaatccttggttgaaggtttatttgctttctgtggctactttggttttggttattataggttctggctacactgg |
17327729 |
T |
|
| Q |
501 |
accttctatg |
510 |
Q |
| |
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| T |
17327728 |
accttctatg |
17327719 |
T |
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