View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9971_low_5 (Length: 511)
Name: NF9971_low_5
Description: NF9971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9971_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 53803178 - 53803663
Alignment:
| Q |
1 |
atcattctgtagttcttcagattcatacattagacatcttactagccaatcattcagggctttcacatggaacttttgagcttgaatccaatctaagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53803178 |
atcattctgtagttcttcagattcatacattagacatcttactagccaatcattcagggctttcacatggaacttttgagcttgaatccaatctaagaag |
53803277 |
T |
|
| Q |
101 |
cttaagttccatttctgtaactcggatttgagctttattgctgcatcaatattagcattgcaaggctttctgttaaatgaggagacatctaaagctttgg |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53803278 |
cttaagttccatttctgtaactcggttttgagctttattgctgcatcaatattagcattgcaaggctttctgttaaatgaggagacatctaaagctttgg |
53803377 |
T |
|
| Q |
201 |
tttcaacaatttcctgatactggcgtttgtaacattcttgcatatctttccacattccgagaaacctttcgtcagcaagtagacgggaaaaagaaatcaa |
300 |
Q |
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| T |
53803378 |
tttcaacaatttcctgatactggcgtttgtaacattcttgcatatctttccacattccgagaaacctttcgtcagcaagtagacgggaaaaagaaatcaa |
53803477 |
T |
|
| Q |
301 |
aagaatataacaatctgttagatttaagaaaatataggtgcattaatgttcaaaacaaacttcaaaagaaacataaataaatgaactttgatataaagaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53803478 |
aagaatataacaatctgttagatttaagaaaatataggtgcattaatgttcaaaacaaacttcaaaagaaacataaataaatgaactttgatataaagaa |
53803577 |
T |
|
| Q |
401 |
atagtctctcataggctgtcctgtccattttcaatcattttttggttttgcacggcatgaaaatcatattcgagacatggtcggatactaa |
491 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53803578 |
atagtctctcatagg-----ctgtccattttcaatcattttttggttttgcacggcatgaaaatcatattcgagacatggtcggatactaa |
53803663 |
T |
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