View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9972_high_4 (Length: 250)
Name: NF9972_high_4
Description: NF9972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9972_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2154158 - 2154399
Alignment:
| Q |
1 |
tcaccgctgaaccgacacctcacaaatagaaaaccataatcttattcgaacaagaactaatcatcaaaatggaaccaaattaagaaacattattaatacc |
100 |
Q |
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| T |
2154158 |
tcaccgctgaaccaacacctcacaaatagaaaaccataatcttattcgaacaagaactaatcatcaaaatggaaccaaattaagaaatattattaatacc |
2154257 |
T |
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| Q |
101 |
tgtccattctttccttgagtttcaacaagaacttttcattatcttcttctgctattttcacaagtctatctaacaaggctcttttttctgttgattcaag |
200 |
Q |
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| T |
2154258 |
tgtccattctttccttgagtttcaacaagaacttttcattatcttcttctgctattttcacaagtctagctaacaaggctcttttttctgttgattcaag |
2154357 |
T |
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| Q |
201 |
ttgaatggtctcaacatcttttccttctccttctcctttgct |
242 |
Q |
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| T |
2154358 |
ttgaatggtctcaacatcttttccttttccttctcctttgct |
2154399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 2166676 - 2166752
Alignment:
| Q |
96 |
atacctgtccattctttccttgagtttcaacaagaacttttcattatcttcttctgctattttcacaagtctatcta |
172 |
Q |
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| T |
2166676 |
atacctttcgattctttccttgagtttcaacaagaacttttcgttatcttcttcagcaattttcacaagtctctcta |
2166752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 2872077 - 2872025
Alignment:
| Q |
97 |
tacctgtccattctttccttgagtttcaacaagaacttttcattatcttcttc |
149 |
Q |
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| T |
2872077 |
tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttc |
2872025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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