View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9972_low_1 (Length: 543)
Name: NF9972_low_1
Description: NF9972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9972_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 10 - 543
Target Start/End: Original strand, 23588857 - 23589392
Alignment:
| Q |
10 |
gatggacatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
109 |
Q |
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| T |
23588857 |
gatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
23588956 |
T |
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| Q |
110 |
gtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccccaaaattgaggaagttgattaagctaaactgt- |
208 |
Q |
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| T |
23588957 |
gtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccccaaaattgaggaagttgattaagctaaactttg |
23589056 |
T |
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| Q |
209 |
--cattggattgatgggtggttcatgannnnnnnngcagggactcttgaattagtagcttaattatatgtatttgttttgatttaggtaatgtagggaac |
306 |
Q |
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| T |
23589057 |
ttcatgggattgatgggtggttcatgattttttttgcaaggactcttgaattagtagcttaattatatgtatttgttttgatttaggtaatgtagggaac |
23589156 |
T |
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| Q |
307 |
tcttatgtcatcagtgtacttctttcacttttaatgttaatcatggtttaagcttctattctacattttacttagtttgattaattgcttattgttctca |
406 |
Q |
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| T |
23589157 |
tcttatgtcatcagtgtacttctttcacttttaatgttaatcatggtttaagcttctattctacattttgcttagtttgattaattgcttattgttctca |
23589256 |
T |
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| Q |
407 |
aactaaattctgttattcttcgttgcatttgctgtgtttatcaggatgaaatggttactatttgctggaaatttaatcaggtaagaaatttgcaggtagg |
506 |
Q |
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| T |
23589257 |
aactaaattgtgttattcttcgttgcatttgctgtgtttatcaggatgaaa-ggttactctttgctgaaaatttaatcaggtaagaaatttgcaggtagg |
23589355 |
T |
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| Q |
507 |
aaaacccttcaattttggtgtttgtttgtagttgata |
543 |
Q |
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| T |
23589356 |
aaaacccttcaattttggtgtttgtttgaagttgata |
23589392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 23597709 - 23597899
Alignment:
| Q |
10 |
gatggacatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
109 |
Q |
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| T |
23597709 |
gatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
23597808 |
T |
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| Q |
110 |
gtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccccaaaattgaggaagttgattaagc |
200 |
Q |
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| T |
23597809 |
gtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagc |
23597899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
22 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
106 |
Q |
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| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 8018554 - 8018633
Alignment:
| Q |
27 |
agaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
106 |
Q |
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| T |
8018554 |
agaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtg |
8018633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 8101687 - 8101615
Alignment:
| Q |
34 |
gatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
106 |
Q |
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| T |
8101687 |
gatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtg |
8101615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 17706804 - 17706893
Alignment:
| Q |
17 |
atcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
106 |
Q |
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| T |
17706804 |
atcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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