View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9972_low_2 (Length: 520)
Name: NF9972_low_2
Description: NF9972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9972_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 6003209 - 6002960
Alignment:
| Q |
7 |
gtgttcattagtaaaacttccactactaatcaaggcccaagtattcccaacagtttgtttggtcattatcatctatctcactctctttttgcaacaaatt |
106 |
Q |
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| T |
6003209 |
gtgttcattagtaaaacttccactactaatcaaggcccaagtattcccaacagtttgtttggtcattatcatctatctcactctctttttgcaacaaatt |
6003110 |
T |
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| Q |
107 |
agggatggtcaaataatgcaatcaagaaggataatgacgattaatcatgnnnnnnnattattagaaaatttaggttaagagagaccctctcatgcacagt |
206 |
Q |
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| T |
6003109 |
agggatggtcaaataatgcaatcaagaaggataatgacgattaatcatgtttttttattattaaaaaatttaggttaagagagaccctctcatgcaaagt |
6003010 |
T |
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| Q |
207 |
tatgtagtacaaccaactcatattttttgggtgttaaaatgatgggcaaa |
256 |
Q |
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| T |
6003009 |
tatgtagtacaaccaactcatattttttgggtgttaaaatgatgggcaaa |
6002960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 271 - 520
Target Start/End: Complemental strand, 6002225 - 6001977
Alignment:
| Q |
271 |
ctaccgagttaaatgaacattttaaggtcaaagaagaaaactcataatttcagatgaaaataatttcgtctgaaatattttaaattttcagacgaaatag |
370 |
Q |
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| T |
6002225 |
ctaccaagttaaatgaacattttaaggtcaaagaagaaaactcacaatttcagatgaaa-taatttcgtttgaaatattttaaattttcagacggattag |
6002127 |
T |
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| Q |
371 |
gaatggattgcgtacgaaatcaacatacgatattttggagtcagactcatttttggttggaatcaaactctatcattgttnnnnnnncttttgctaatac |
470 |
Q |
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| T |
6002126 |
ggatggattgcgtacgaaatcaacatacgatatcttggagtcagactcatttttagttggaatcagactctatcattgttaaaaaaacttttgctaatac |
6002027 |
T |
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| Q |
471 |
tcatttaattgttgccttggagcttaaggaacatgcaacttaattgtctc |
520 |
Q |
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| T |
6002026 |
tcatttaattgttgccttggagcttaaggaacatgcaacttaattgtctc |
6001977 |
T |
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