View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9972_low_5 (Length: 363)
Name: NF9972_low_5
Description: NF9972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9972_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 2153741 - 2154053
Alignment:
| Q |
16 |
atcttcaaagtcaatgcttcataaataggagatttacaaaaagactaaacattataagtctcagttcactaaacttgttcnnnnnnncactatgaaaagg |
115 |
Q |
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| T |
2153741 |
atcttcaaagtcaatgcttcataaataggagatttacaaaaagactaaacattataaggctcagttcacaaaacttgttcaaaaaa-cactatgaaaagg |
2153839 |
T |
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| Q |
116 |
aatcttgtaataattacgagattttggcgagtttgtttccgacaactcaccaaagtacacatctcacactctaagagcacatacaaatgtacttacacaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2153840 |
aatcttgtaataattacgagattttggcgagtttgtttccgacaactcatcaaagtacacgtctcacactctaagagcacatacaaatgtacttacacaa |
2153939 |
T |
|
| Q |
216 |
tatggtccacaacgacaatagtacatcaacaatatgttactaattcttttgtttaatttttccatgaacatctatgagcttataaggatttttccataaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2153940 |
tatggtccacaacgacaatagtacatcaacaatatgttactaattcttttgtttaatttttccatgaacatctatgagcttataaggatttttccataaa |
2154039 |
T |
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| Q |
316 |
atttgaaaaaaaaa |
329 |
Q |
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|||||||||||||| |
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| T |
2154040 |
atttgaaaaaaaaa |
2154053 |
T |
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