View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9972_low_6 (Length: 317)
Name: NF9972_low_6
Description: NF9972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9972_low_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 49207215 - 49206929
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49207215 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
49207116 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49207115 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
49207016 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49207015 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtgat |
49206929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 49211789 - 49211503
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49211789 |
aggcagaagcacaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctgtacgcaaagaaaaaagaggcagaggggat |
49211690 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
49211689 |
tgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactatacagcagtaagggattacttgatgataaatggt |
49211590 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49211589 |
ggcatgtttcaagagattgctaagattaatgctgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtgat |
49211503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 49202260 - 49201974
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||| || ||||| | |||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49202260 |
aggcagaagcacagaaagcgtcagcagatgcaacattttatgcttgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
49202161 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49202160 |
tgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
49202061 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49202060 |
ggcatgtttcaagagattgctaagattaatgccgaggcagtacgcggacttgagcctaagattagtatttggactaatggtagtgat |
49201974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 49187280 - 49186994
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||| || ||||| | ||||||| | |||||||||||| |||| |||| ||||||||||||||| || ||||||||||| ||||||||||| || |
|
|
| T |
49187280 |
aggcagaagcacagaaagcgtcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaat |
49187181 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49187180 |
tgtgacacttggacaagctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctgtaagggattacttgatgataaatggt |
49187081 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtgat |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49187080 |
gacatgtttcaagagattgctaagattaatgccgaggcaatacgcggacttgagcctaagattagtatttggactaatggtggtgat |
49186994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 49190971 - 49190685
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||| || |||||||| ||||| | |||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
49190971 |
aggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagcagctgaagcagagctatatgcaaagaaaaaggaggcagagggaat |
49190872 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
| |||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
49190871 |
tgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaatggt |
49190772 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtgat |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49190771 |
ggcatgtttcaagagatcgctaagattaatgctgaggcagtacgcggacttgagcctaagattagtatttggactaatggtggtgat |
49190685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 51823977 - 51823698
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||| || ||||||||||||||| | ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51823977 |
aggcagaagcacagaaagcattggcagatgcaacattttatgcgtgcaagcaagcagctgaagcagatctatacgcaaagaaaaaagaggcagaggggat |
51823878 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51823877 |
tgtgacacttggaaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggt |
51823778 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatgg |
293 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
51823777 |
ggcatgtttcaagagatggctaagattaatgctgaggcagtacgtggacttgaacctaagattagtatttggactaatgg |
51823698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 31527087 - 31526802
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||| || ||||||||| ||||| | ||||||||||| |||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
31527087 |
aggcagaagcacagaaagcattgtcagatgcaacattttatgcgcgcaagcaagcagccgaagcggagctatatgcaaagaaaaaagaggcagaggggat |
31526988 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31526987 |
tgtgacacttgggaatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggt |
31526888 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtga |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
31526887 |
ggcatgtttcaagagatggctaagattaatgctgaggcggtacgtggacttgaacctaagattagtatttggactaatggaggtga |
31526802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 32593314 - 32593593
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||| || ||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32593314 |
aggcagaagcacagaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggat |
32593413 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32593414 |
tgtgacacttgggaatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggt |
32593513 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatgg |
293 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||| |||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
32593514 |
ggcatgtttcaagagatggctaagatcaatgctgaggcagtacatggacttgaacctaagattagtatttggactaatgg |
32593593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 37030426 - 37030141
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||| || ||||||| ||||||| | |||||||||||| |||| |||| ||||||||||||||| || ||||||||||| ||||||||||| || |
|
|
| T |
37030426 |
aggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaat |
37030327 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
| ||||| |||| | |||||||| | ||||||||||| |||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37030326 |
tgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggattacttgatgataaatggt |
37030227 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtga |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37030226 |
ggcatgtttcaagagattgctaagattaacgccgaggcaatacgaggacttgagcctaagattagtatttggactaatgggggtga |
37030141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 26756258 - 26755977
Alignment:
| Q |
14 |
aggcagaagcgcaaaaagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggat |
113 |
Q |
| |
|
|||||||||| || | |||||||||| || | |||||||||||||| || |||| ||| |||||||||||||| |||||||| || ||||| |||||||| |
|
|
| T |
26756258 |
aggcagaagcacagatagcattggcaaatgcaacattttatgctcgtaaacaagcagccgaagcagagctatatgcaaagaagaaggaggcggaggggat |
26756159 |
T |
|
| Q |
114 |
tatgacacttgggaatgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggt |
213 |
Q |
| |
|
||||||||||||||| |||||| | || ||||||||| |||||||| ||||||||| | || |||||||||||||| |||||||||||||||||| |
|
|
| T |
26756158 |
cgtgacacttgggaatggtcaaggggtgtgtgtaagtacccttctcaacgcacttggaggtgattatacagctgtaagggactacttgatgataaatggt |
26756059 |
T |
|
| Q |
214 |
ggcatgtttcaagagattgctaagattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtg |
295 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26756058 |
ggcatgtttcgagatattgcgaagattaatgctgaggctatacgcggacttgaacctaagattagtatttggactaatggtg |
26755977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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