View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9972_low_7 (Length: 306)
Name: NF9972_low_7
Description: NF9972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9972_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 48 - 263
Target Start/End: Complemental strand, 26867073 - 26866863
Alignment:
| Q |
48 |
ctatacttgattagaatatctttacattaaatataaaaatattctggtatagggatattctatcataatcgaagttgttacttgttagctaacgcttcaa |
147 |
Q |
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| T |
26867073 |
ctatacttgattagaatatctttacattaaatataaaaatattctggtatagggatattctatcaaaatcgaagttgttacttgttagctaacgctt--- |
26866977 |
T |
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| Q |
148 |
agcgaaaatgtatatataattaggacaaatcctgttgagccaacgttttttacttcaaccgtacagcccaatatatagtactatatccgttcctgattat |
247 |
Q |
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| T |
26866976 |
--cgaaaatgtatatataattaggacaaatcctgttgagccaacgttttttacttcaactgtacaacccaatatatagtactacctccgtccttaattat |
26866879 |
T |
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| Q |
248 |
aagaccattttgagaa |
263 |
Q |
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| T |
26866878 |
aagacccttttgagaa |
26866863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 34948688 - 34948651
Alignment:
| Q |
226 |
tactatatccgttcctgattataagaccattttgagaa |
263 |
Q |
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| T |
34948688 |
tactacatccgttcctaattataagaccattttgagaa |
34948651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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