View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9973_1 (Length: 712)

Name: NF9973_1
Description: NF9973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9973_1
NF9973_1
[»] chr1 (1 HSPs)
chr1 (23-669)||(18196993-18197643)


Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 23 - 669
Target Start/End: Original strand, 18196993 - 18197643
Alignment:
Q  23 catcatgatctttcatgtcaaatgtttaacaattcggagataaaaaatgtaatcaaataatccatattttatatatttaaaattcccacattaattttaa 122  Q
    ||||||||| |||||||||||||||| |||||||| ||||| || | || ||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  18196993 catcatgatatttcatgtcaaatgttcaacaattcagagatcaaga-tgcaactaaataatccatattttatatatttaaaatttccacattaattttaa 18197091  T
Q  123 tatcactttgatataaacaatgttaaattttatcggtatagtaatcaaaacatatatgataggaatttccaatcaaacatttgcgagaatcctaaattaa 222  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  18197092 tatcattttgatataaacaacgttaaattttatcggtatagtaatcaaaacatatatgataagaatttccaatcaaatatttgcgagaatcctaaattaa 18197191  T
Q  223 caagaaagccaagcagtaactgctgaaagagatagatgtacccgataacacaaatgaccaaataaacgcttaagaatg-aatgtcttacctttgtgtata 321  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||| |    
T  18197192 caagaaagccaggcagtaactgctgaaagagatagatgtacccgataacacaaatgaccaaataaaaggttaagaatgaaatgtcttaccttggtgtaaa 18197291  T
Q  322 gattaataagacaaccatagctgacaatcgagggagaaaaaccacattccttcattggnnnnnnnnnnntgttactctgcagttcaatgtcaagtggagt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||| ||||| ||||||| |||||||||||    
T  18197292 gattaataagacaaccatagctgacaatcgagggagaaaaaccacattccttcattggaaaaaaaaaaatgttattctgccgttcaatatcaagtggagt 18197391  T
Q  422 agcatacaataggttttagatatcatgtttaatagatagag----ctcgtagagcaatatatcaaatgctaaattaagaaaaaagttacatatagaaaac 517  Q
     | | |||||||||| |||||||||||||||||||||||||    || |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  18197392 ggaagacaataggttatagatatcatgtttaatagatagaggtgacttgtagagtaatatatcagatgctaaattaagaaaaaagttacatatagaaaac 18197491  T
Q  518 --gaaaaacagagacacctttcctaaaatccaagaagtaaacaaacatctcatacacttcgatgcacaaaatgattaaataactggatatttattgatta 615  Q
       ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||    
T  18197492 aaaaaaaacagagacacctttcctaaaatctaagaagtaaacaaacatctcatacactt-gatgcacaaaatgattaaataactgaata-ttatggatta 18197589  T
Q  616 tatattatctgaaacaaaaattataaaaatctgcattctgacattggtaaattt 669  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  18197590 tatattttctgaaacaaaaattataaaaatctgcattctgacattgataaattt 18197643  T

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