View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9973_4 (Length: 362)
Name: NF9973_4
Description: NF9973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9973_4 |
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Alignment Details
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 8017755 - 8017675
Alignment:
| Q |
270 |
ttgtgattaagaaactcaatttcttgatttaaattttgcaatttaacatgtgtagtattgttaggtttttctttgattttg |
350 |
Q |
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| T |
8017755 |
ttgtgattaagcaactaaatttcttgttttaaattttgcaatttaacatgtgtagtgtttttaggtttgtgttttattttg |
8017675 |
T |
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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 2590791 - 2590743
Alignment:
| Q |
85 |
aattggggcagtaagtaaatacaacgaagctaacatgaaaagctaatcc |
133 |
Q |
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| T |
2590791 |
aattggggcagtaagtaaatacaacgaagctaacatgaaaagctaatcc |
2590743 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 2592762 - 2592836
Alignment:
| Q |
20 |
gttgatgatgtagttgttgtggtaat----aggtgaaattgaaaagaaaattgagaagaggttcagggaaattgg |
90 |
Q |
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| T |
2592762 |
gttgatgatgtagttgttgtagtaattaataggcgaaattgaaaagaaaactgagaagaggttcaaggaaattgg |
2592836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 33870061 - 33869995
Alignment:
| Q |
269 |
tttgtgattaagaaactcaatttcttgatttaaattttgcaatttaacatgtgtagtattgttaggt |
335 |
Q |
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| T |
33870061 |
tttgtgattaatttactcaatttcttgttttgaattttgcgatttaacatgtgtagtatttttaggt |
33869995 |
T |
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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 2440818 - 2440872
Alignment:
| Q |
21 |
ttgatgatgtagttgttgtggtaataggtgaaattgaaaagaaaattgagaagagg |
76 |
Q |
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| T |
2440818 |
ttgatgatggagttgttgtggtaatatgtgaaatt-aaaagaaaaatgagaagagg |
2440872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 2624311 - 2624354
Alignment:
| Q |
47 |
ggtgaaattgaaaagaaaattgagaagaggttcagggaaattgg |
90 |
Q |
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| T |
2624311 |
ggtgaaattgaaaagaaaattgagaagaagttcagagaaattgg |
2624354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 2596043 - 2595994
Alignment:
| Q |
39 |
tggtaataggtgaaattgaaaagaaaattgagaagaggttcagggaaatt |
88 |
Q |
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| T |
2596043 |
tggtaataggtaaaattgaaaagaaaaatgagaagaggtttaggaaaatt |
2595994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 2568503 - 2568438
Alignment:
| Q |
23 |
gatgatgtagttgttgtggtaataggtgaaattgaaaagaaaattgagaagaggttcagggaaattgg |
90 |
Q |
| |
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| T |
2568503 |
gatgatgtacttgttgtgataacaggtgaaattgaaaataaaattgag--gaggtttacggaaattgg |
2568438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 31539074 - 31539009
Alignment:
| Q |
268 |
ttttgtgattaagaaactcaatttcttgatttaaattttgcaatttaacatgtgtagtattgttag |
333 |
Q |
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| T |
31539074 |
ttttgtgattaatcaactcaatttatggttttgaatttttcaatttaacatgtgtagtattcttag |
31539009 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 13649237 - 13649183
Alignment:
| Q |
190 |
agtttgtgtcaaactccaaagttcattcagtaattatttcttgatccctttcaaa |
244 |
Q |
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|||| ||| ||||| |||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
13649237 |
agttggtgccaaacaccaaagttcattcactaattatttctagatacctttcaaa |
13649183 |
T |
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