View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9973_5 (Length: 343)
Name: NF9973_5
Description: NF9973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9973_5 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 51273918 - 51274120
Alignment:
| Q |
1 |
tgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaac |
100 |
Q |
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| T |
51273918 |
tgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaac |
51274017 |
T |
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| Q |
101 |
cggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacagg |
200 |
Q |
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| T |
51274018 |
cggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacagg |
51274117 |
T |
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| Q |
201 |
ttc |
203 |
Q |
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||| |
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| T |
51274118 |
ttc |
51274120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 14907947 - 14908094
Alignment:
| Q |
1 |
tgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaac |
100 |
Q |
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| T |
14907947 |
tgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcctcacaaaagataggatcaaatttccactccctccaccgctacgaac |
14908046 |
T |
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| Q |
101 |
cggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
148 |
Q |
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| T |
14908047 |
cagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 32855661 - 32855571
Alignment:
| Q |
217 |
acttatataacaatatacatgctttagtccactttataatacttgcttttatgaacataatatttttatattgatgtacaaggtttgaact |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
32855661 |
acttatataacaatatacatgctttagtccactttataatacttgcttttatgaacataatatttttatgttggtggacaaggtttgaact |
32855571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 203
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
49 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
147 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
148 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
203 |
Q |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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