View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9973_low_3 (Length: 364)
Name: NF9973_low_3
Description: NF9973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9973_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 43070012 - 43069875
Alignment:
| Q |
163 |
taacctgtgcagagtattacataacgtccaatactctatagataa--aaaataagtgtgcaaagtctggagagnnnnnnnncgtgcaaagtctaacataa |
260 |
Q |
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| T |
43070012 |
taacccgtgcagagtattacataacgtccaatactctatagataaaaaaaaaaagtgtgcaaagtctggaga-aaaaaaaacgtgcaaagtctaacataa |
43069914 |
T |
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| Q |
261 |
aatacgtgcnnnnnnnntctggagcaagcctggaataac |
299 |
Q |
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| T |
43069913 |
aatacgtgcaaaaaaaatctggagcaagcctggaataac |
43069875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43070087 - 43070013
Alignment:
| Q |
1 |
ttttttataacaatctttttgaccaatgttatataaccaacgaatcaatgcatgtacttttttaatgaataaaagg |
76 |
Q |
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| T |
43070087 |
ttttttataacaatctttt-gaccaatgttatacaaccaacgaatcaatgcatgtacttttttaatgaataaaagg |
43070013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 43069856 - 43069815
Alignment:
| Q |
310 |
cgattccttgtgttttaaacaattaaaatactctattactct |
351 |
Q |
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| T |
43069856 |
cgattacttgtgttttaaacaattaaaatactttattactct |
43069815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 29631449 - 29631408
Alignment:
| Q |
121 |
aatattttagatgtgaactataacatcattttcttgtaaaaa |
162 |
Q |
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| T |
29631449 |
aatattttagattttaactataacatcattttcttgtaaaaa |
29631408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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