View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9973_low_4 (Length: 253)

Name: NF9973_low_4
Description: NF9973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9973_low_4
NF9973_low_4
[»] chr3 (7 HSPs)
chr3 (1-146)||(8717003-8717148)
chr3 (1-146)||(9068890-9069035)
chr3 (150-239)||(26847736-26847825)
chr3 (150-238)||(2043735-2043823)
chr3 (25-138)||(8723350-8723473)
chr3 (25-138)||(9075237-9075360)
chr3 (151-239)||(40034732-40034820)
[»] chr5 (5 HSPs)
chr5 (150-239)||(15434416-15434505)
chr5 (150-239)||(900889-900978)
chr5 (150-239)||(2250330-2250419)
chr5 (198-239)||(30839962-30840003)
chr5 (150-205)||(30839723-30839778)
[»] chr7 (4 HSPs)
chr7 (150-239)||(38174624-38174713)
chr7 (150-236)||(6494747-6494833)
chr7 (150-239)||(45849487-45849577)
chr7 (161-204)||(44732493-44732536)
[»] chr6 (8 HSPs)
chr6 (150-239)||(29396448-29396537)
chr6 (151-239)||(22956984-22957072)
chr6 (151-239)||(23831320-23831408)
chr6 (150-239)||(18141386-18141475)
chr6 (153-239)||(22995981-22996065)
chr6 (153-239)||(23792335-23792419)
chr6 (151-230)||(21203302-21203381)
chr6 (172-228)||(9961216-9961272)
[»] chr1 (2 HSPs)
chr1 (150-239)||(9388564-9388653)
chr1 (150-239)||(10366569-10366658)
[»] chr2 (1 HSPs)
chr2 (150-239)||(33538179-33538268)
[»] chr4 (4 HSPs)
chr4 (176-239)||(33152512-33152575)
chr4 (150-239)||(3684735-3684824)
chr4 (150-205)||(2728259-2728314)
chr4 (207-239)||(2728602-2728634)
[»] chr8 (2 HSPs)
chr8 (151-230)||(37819877-37819956)
chr8 (150-193)||(24511979-24512022)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8717148 - 8717003
Alignment:
1 taaatcccaaaagtaaaatatttgtacgtttcaccaaatttttgttcaatttctcttatgggtgtctacttattaatgtacaaggttatgcgaatcccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
8717148 taaatcccaaaagtaaaatatttgtacgtttcaccaaatttttgttcaatttctcttatgggtgtctacttatttatgtacaaggttatgcgaatcccaa 8717049  T
101 tgttgatagtgaggttttttaccatgcaaactctatatcattttac 146  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||    
8717048 tgttgatagtgaggttgtttaccatgcaaaatctatatcattttac 8717003  T

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Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 9069035 - 9068890
Alignment:
1 taaatcccaaaagtaaaatatttgtacgtttcaccaaatttttgttcaatttctcttatgggtgtctacttattaatgtacaaggttatgcgaatcccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
9069035 taaatcccaaaagtaaaatatttgtacgtttcaccaaatttttgttcaatttctcttatgggtgtctacttatttatgtacaaggttatgcgaatcccaa 9068936  T
101 tgttgatagtgaggttttttaccatgcaaactctatatcattttac 146  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||    
9068935 tgttgatagtgaggttgtttaccatgcaaaatctatatcattttac 9068890  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 26847825 - 26847736
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |||| |||||||||    
26847825 gaatgatatgtgaacaatcaaattgtacaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccgtgctcctc 26847736  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 2043735 - 2043823
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcct 238  Q
    ||||||||||  || ||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
2043735 gaatgatatgtaaataactaaattgtacaaccaacaacttatttgctatctttaatgatattttgattgatttcgatttatgtgctcct 2043823  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 8723473 - 8723350
Alignment:
25 tacgtttcaccaaatttttgttcaatttctcttatgggtgtctacttattaatgtac----------aaggttatgcgaatcccaatgttgatagtgagg 114  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||          ||||||||| |||||||||||||||| |||||     
8723473 tacgtttcaccaaatttttgttcaactgctcttatgggtgtctgcttatttatgaacaaggttgaataaggttatgtgaatcccaatgttgatcgtgaga 8723374  T
115 ttttttaccatgcaaactctatat 138  Q
    || |||||||||||||||||||||    
8723373 ttctttaccatgcaaactctatat 8723350  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 9075360 - 9075237
Alignment:
25 tacgtttcaccaaatttttgttcaatttctcttatgggtgtctacttattaatgtac----------aaggttatgcgaatcccaatgttgatagtgagg 114  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||          ||||||||| |||||||||||||||| |||||     
9075360 tacgtttcaccaaatttttgttcaactgctcttatgggtgtctgcttatttatgaacaaggttgaataaggttatgtgaatcccaatgttgatcgtgaga 9075261  T
115 ttttttaccatgcaaactctatat 138  Q
    || |||||||||||||||||||||    
9075260 ttctttaccatgcaaactctatat 9075237  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 40034732 - 40034820
Alignment:
151 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    ||||||||| |||||  |||||||||||||||| |||||||||  |||||||||| ||||||| | ||||||  ||||| |||||||||    
40034732 aatgatatgtgaacattcaaattgtacaaccaacaacttatttattatttttaataatattttacatgattttaatttccgtgctcctc 40034820  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 15434416 - 15434505
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
15434416 gaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctacttttaatgatattttgcttgattttgatttctgtgctcctc 15434505  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 900889 - 900978
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||  ||||||||    
900889 gaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccatgctcctc 900978  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 2250330 - 2250419
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||| ||| || |||||||||||| ||| || ||||||  |||||||||||||||||||| |||||| |||||| || ||||||    
2250330 gaatgatatgtgaagaatcaaattgtacaatcaacaatttatttattatttttaatgatattttgcatgattttgatttccgtactcctc 2250419  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 30839962 - 30840003
Alignment:
198 tttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
30839962 tttttaataatattttgcttgatttcgatttctgtactcctc 30840003  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 30839723 - 30839778
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaat 205  Q
    |||||||||| ||||||| ||||||||| ||||| || ||| ||||||||||||||    
30839723 gaatgatatgtgaacaactaaattgtacgaccaacaatttacttgctatttttaat 30839778  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 38174624 - 38174713
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||| | |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||    
38174624 gaatgatacgtgaacaaccaaattgtacaaccaataacttacttgatatttttaataatattttgcttgatttcgatttctgtgctcctc 38174713  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 6494747 - 6494833
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctc 236  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | |||| ||||||    
6494747 gaatgatatgtgaacaacaaaattgtacaatcaataacttatttgctatttttaatgatattttgcatgattttgttttccgtgctc 6494833  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 45849577 - 45849487
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttga-tttcgatttctgtgctcctc 239  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |||| ||||||||||    
45849577 gaatgatacgtgaacaaccaaattgtacaaccaataatttatttgctatttttaataatattttgcttgattttcaatttatgtgctcctc 45849487  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 44732536 - 44732493
Alignment:
161 gaacaaccaaattgtacaaccaataacttatttgctatttttaa 204  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||    
44732536 gaacaatcaatttgtacaaccaataacttatttgttatttttaa 44732493  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 29396448 - 29396537
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
29396448 gaatgatatgtgaacagccaaattgtacaaccaacaacttatttgctatttttaatgatattttgattgatttcgatttttgtgctcctc 29396537  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 22956984 - 22957072
Alignment:
151 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||  || ||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||    
22956984 aatgatatgtaaataaccaaattgtacaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctc 22957072  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 23831408 - 23831320
Alignment:
151 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||  || ||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||    
23831408 aatgatatgtaaataaccaaattgtacaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctc 23831320  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 18141386 - 18141475
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||| |||||||||||| |||||||||  ||||||||| ||||||||||| ||||||| |||||||||||||| ||| ||||||    
18141386 gaatgatatgtgaacaaccaaatcgtacaaccagcaacttattttctatttttaataatattttacttgatttcgatttatgtactcctc 18141475  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 22995981 - 22996065
Alignment:
153 tgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    ||||||| |||||||||||||||| |||||| |||||  |||||||||||||| ||||||||| |||||||||||| ||||||||||    
22995981 tgatatgtgaacaaccaaattgtataaccaacaactt--ttgctatttttaataatattttgcctgatttcgatttatgtgctcctc 22996065  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 23792419 - 23792335
Alignment:
153 tgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    ||||||| |||||||||||||||| |||||| |||||  |||||||||||||| ||||||||| |||||||||||| ||||||||||    
23792419 tgatatgtgaacaaccaaattgtataaccaacaactt--ttgctatttttaataatattttgcctgatttcgatttatgtgctcctc 23792335  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 21203381 - 21203302
Alignment:
151 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttct 230  Q
    ||||||||| ||||||||||||||||||| ||| |||||| ||| |||||||||| || ||||||||||||| |||||||    
21203381 aatgatatgtgaacaaccaaattgtacaatcaacaacttacttgatatttttaataatgttttgcttgattttgatttct 21203302  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 9961272 - 9961216
Alignment:
172 ttgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgattt 228  Q
    |||||||||||| |||||||||||||||||| |  || ||||| |||||||||||||    
9961272 ttgtacaaccaacaacttatttgctattttttaatattttttgattgatttcgattt 9961216  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 9388564 - 9388653
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||    
9388564 gaatgatatgtgaacaattaaattgtacaaccaacaacttatttactatttttaatgatattttgtctgatttcgatttatgtgctcctc 9388653  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 10366569 - 10366658
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||| | |||||| |||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||| ||||||||||    
10366569 gaatgatacgtgaacaatcaaattgtacaaccaacaacttatttgttatttttaatgatattttatttgatttcgatttatgtgctcctc 10366658  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 33538179 - 33538268
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||| ||| || |||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |||||| || ||||||    
33538179 gaatgatatgtgaaaaatcaaattgtacaaccaacaacttatttactatttttaatgatattttgcatgattttgatttccgtactcctc 33538268  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 33152575 - 33152512
Alignment:
176 acaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||    
33152575 acaaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctc 33152512  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 3684735 - 3684824
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 239  Q
    |||| ||||| ||||||| |||||||| |||||| ||  ||||||||||||||||| ||||||||  |||||||||||| ||||||||||    
3684735 gaataatatgtgaacaactaaattgtaaaaccaacaatatatttgctatttttaataatattttgtctgatttcgatttttgtgctcctc 3684824  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 2728259 - 2728314
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaat 205  Q
    |||||||||| ||||||| ||||| ||||||||| |||||| ||||||||||||||    
2728259 gaatgatatgtgaacaactaaattatacaaccaacaacttacttgctatttttaat 2728314  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 2728602 - 2728634
Alignment:
207 atattttgcttgatttcgatttctgtgctcctc 239  Q
    |||||||||||||||||||||| ||||||||||    
2728602 atattttgcttgatttcgatttatgtgctcctc 2728634  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 37819956 - 37819877
Alignment:
151 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttct 230  Q
    ||||||||  ||||||| ||||||||||||||| || ||||||||||| |||||| |||||||   ||||||||||||||    
37819956 aatgatatttgaacaactaaattgtacaaccaacaatttatttgctatgtttaataatattttatctgatttcgatttct 37819877  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 24511979 - 24512022
Alignment:
150 gaatgatatgcgaacaaccaaattgtacaaccaataacttattt 193  Q
    |||||||||  ||||||||||||||||||||||| |||||||||    
24511979 gaatgatatctgaacaaccaaattgtacaaccaacaacttattt 24512022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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