View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9974_low_3 (Length: 335)
Name: NF9974_low_3
Description: NF9974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9974_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 43065433 - 43065732
Alignment:
| Q |
11 |
catcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttctattcatgcacgtgtttaat |
110 |
Q |
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| T |
43065433 |
catcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttcgattcatgcacatgtttaat |
43065532 |
T |
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| Q |
111 |
cgcaattctgaatcctatcgnnnnnnnatttatgaatcgctagttttaaaatagtcgatggttctgtgttctcatatatacttcattcttgcattttaac |
210 |
Q |
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| T |
43065533 |
cgcaattctgaatcctatcgtttttttatttatgaatcgctagttttaaaatagttgatggttctgtgttctcatatatacttcattcttgcattttaac |
43065632 |
T |
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| Q |
211 |
attaccatgccattattatattatcgtaatgnnnnnnnnnagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtat |
310 |
Q |
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| T |
43065633 |
attaccatgccattattatattatcgtaatg-ttttttttagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtat |
43065731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 43047473 - 43047402
Alignment:
| Q |
19 |
attcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
90 |
Q |
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| T |
43047473 |
attcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
43047402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 43047289 - 43047239
Alignment:
| Q |
181 |
ctcatatatacttcattcttgcattttaacattaccatgccattattatat |
231 |
Q |
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| T |
43047289 |
ctcatacattcttcattcatgcattttaacattaccatgccattattatat |
43047239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 42159107 - 42159055
Alignment:
| Q |
33 |
tattcgtgttgtttactttacatctgcgattgattacattataatgcttttgt |
85 |
Q |
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||||||||| |||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
42159107 |
tattcgtgtactttactttacatctttgatcgattacataataatgcttttgt |
42159055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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