View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9975_high_2 (Length: 342)
Name: NF9975_high_2
Description: NF9975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9975_high_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 27261628 - 27261951
Alignment:
| Q |
19 |
gttacatagttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctattcaatg |
118 |
Q |
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| T |
27261628 |
gttacatagttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctattcaatg |
27261727 |
T |
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| Q |
119 |
ttggacaagttgtaacttctaagtgatgatgatattccactttcgcattgtttatgcagtgttgtatgcatcattatattttttctagaatgtatgggat |
218 |
Q |
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| T |
27261728 |
ttggacaagttgtaacttctaagtgatgatgatattccactttcgcattgtttatgcagtgttgtatgcatcattatattttttctagaatgtatgggat |
27261827 |
T |
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| Q |
219 |
ttttgttgagaatttgtagatgccctaagtaacgatattccgattttacattgttgataaaatattgtatgtttcattgtaataatctattgagtcttat |
318 |
Q |
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| T |
27261828 |
ttttgttgagaatttgtagatgccctaagtaacgatattccgattttacattgttgataaaatattgtatgtttcattgtaataatctattgagtcttat |
27261927 |
T |
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| Q |
319 |
tttttgttgcttgtgtgtggatgc |
342 |
Q |
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| T |
27261928 |
tttttgttgcttgtgtgtggatgc |
27261951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 27250043 - 27250122
Alignment:
| Q |
262 |
ttttacattgttgataaaatattgtatgtttcattgtaataatctattgagtcttattttttgttgcttgtgtgtggatgc |
342 |
Q |
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| T |
27250043 |
ttttacatcgttgtttcaatattttatgtttcattgttctaatttcttgtgtcttgtttt-tgttgcttgtgtgtggatgc |
27250122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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