View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9975_low_1 (Length: 393)
Name: NF9975_low_1
Description: NF9975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9975_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 35866151 - 35865783
Alignment:
| Q |
14 |
atcatgttgcgcatgttgcaccgagaaatttatatcactaataatctatgaatggaagctgttcctatatagaaaccgtaaccaatttataatctagtta |
113 |
Q |
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| T |
35866151 |
atcatgttgcgcatgttgcaccaagaaatttatatcactaataatctatgaatggaagctgttcctatatagaaaccgtaaccaatttataatctagtta |
35866052 |
T |
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| Q |
114 |
ttgctatcaaagaaacgggtttatttgatgatgatcaaatgtttaattgtgttgatcataatttacttggttaccttaccatagacaaatataaggcatt |
213 |
Q |
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| T |
35866051 |
ttgctatcaaagaaacgggattatttgatgatgatcaaatgtttaattgtgttgatcataatttacttggttaccttaccatagacaaatataaggcatt |
35865952 |
T |
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| Q |
214 |
gatggattatattaaattcttttacaagcatggatggtagagtatttggggcctgatcattaaaactgagaactgtgaaagtcctcgcaaactgtttatg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35865951 |
gatggattatattaaattcttttacaagcatggatggtagagtatttggggcctgatcattaaaactgagaactgtgaaagtccttgcaaactgtttatg |
35865852 |
T |
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| Q |
314 |
ctttcctgtccaactgttttctatgctttttctatactaacatcgtttgaatttggatgatctctgctt |
382 |
Q |
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| T |
35865851 |
ctttcctgtccaactgttttctatgctttttctatactaacatcgtttgaatttggatgatctatgctt |
35865783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 34815914 - 34815699
Alignment:
| Q |
14 |
atcatgttgcgcatgttgcaccgagaaatttatatcactaataatctatgaatggaagctgttcctatatagaaaccgtaaccaatttataatctagtta |
113 |
Q |
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| T |
34815914 |
atcatgttgagcctgtggcatcaagaaatttataccactagtgatctactaatggaagttttgcttatatagaaaccgtaatcaatttataatttagtga |
34815815 |
T |
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| Q |
114 |
t----tgctatcaaagaaacgggtttatttgatgatgatcaaatgtttaattgtgttgatcataatttacttggttaccttaccatagacaaatataagg |
209 |
Q |
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| ||||||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
34815814 |
tgccttgctatcaaagaaacaagtttatttcaggatgatcaaatttttaattgtgttgatcataatttacttagttgccttaccatagacaaatttaagg |
34815715 |
T |
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| Q |
210 |
cattgatggattatat |
225 |
Q |
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|||| |||| |||||| |
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| T |
34815714 |
cattaatggcttatat |
34815699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 376
Target Start/End: Complemental strand, 34815695 - 34815574
Alignment:
| Q |
254 |
agtatttggggcctgatcattaaaactgagaactgtgaaagtcctcgcaaactgtttatgctttcctgtccaactgttttctatgctttttctatactaa |
353 |
Q |
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||||||||||| ||||||| |||||||| |||| ||||| |||| ||| ||||||| |||||||||||| | ||||||| ||| ||||||||||||| |
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| T |
34815695 |
agtatttggggtctgatcaacaaaactgaaaactatgaaaatccttgcagactgtttctgctttcctgtcttatggttttctgtgc-ttttctatactaa |
34815597 |
T |
|
| Q |
354 |
catcgtttgaatttggatgatct |
376 |
Q |
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|| |||| ||||||||| |||| |
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| T |
34815596 |
cactgtttaaatttggattatct |
34815574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 34839897 - 34839953
Alignment:
| Q |
325 |
aactgttttctatgctttttctatactaacatcgtttgaatttggatgatctctgctt |
382 |
Q |
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||||||||||||||||||| ||| || |||||||||||||||||||| |||| ||||| |
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| T |
34839897 |
aactgttttctatgctttt-ctacaccaacatcgtttgaatttggattatctatgctt |
34839953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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