View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9975_low_3 (Length: 239)
Name: NF9975_low_3
Description: NF9975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9975_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27634746 - 27634969
Alignment:
| Q |
1 |
tcatctcttcacatgaattttcaacaaaaaatctaa-gcttcaatctaaaatccagaaattccctaacttcttctcactcacccaataacccgtttcacg |
99 |
Q |
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| T |
27634746 |
tcatctcttcacatgaatcttcaacaaaaaatccaacgcttcaatccaaaatccagaaattccctaacttcttctcactcacccaataacccgtttcaca |
27634845 |
T |
|
| Q |
100 |
cttgagaagaaatatatagaagtcaaaagccaacattaaagatgaaccaaaaatcatatttctaaaactcaaaactttatcattgtataacaactcttta |
199 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
27634846 |
cttgagaagaaaaatgtagaagtcaaaagccaacattaaagatgaaccaaaaatcatatttctaaaaatcaaaactttatcattgtacaacaactcttta |
27634945 |
T |
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| Q |
200 |
acctcaaaaccatgtcttcatcat |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
27634946 |
acctcaaaaccatgtcttcatcat |
27634969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 2748697 - 2748775
Alignment:
| Q |
144 |
aaccaaaaatcatatttctaaaactcaaaactttatcattgtataacaactctttaacctcaaaaccatgtcttcatca |
222 |
Q |
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||||||||| | |||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||| |
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| T |
2748697 |
aaccaaaaaccccatttctaaaaatcaaaactttatcatcgtacaacaaccctttaacctcaaaaccatgtcttcatca |
2748775 |
T |
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