View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9976_high_2 (Length: 294)

Name: NF9976_high_2
Description: NF9976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9976_high_2
NF9976_high_2
[»] chr7 (2 HSPs)
chr7 (202-259)||(43283830-43283887)
chr7 (202-254)||(43284572-43284624)
[»] chr8 (5 HSPs)
chr8 (202-259)||(3584600-3584657)
chr8 (202-259)||(3583729-3583786)
chr8 (202-259)||(39862311-39862368)
chr8 (205-259)||(35020168-35020222)
chr8 (202-259)||(39861783-39861840)
[»] chr3 (4 HSPs)
chr3 (141-250)||(18590-18703)
chr3 (1-42)||(29536223-29536264)
chr3 (202-254)||(17965-18017)
chr3 (223-262)||(6740006-6740045)
[»] chr2 (3 HSPs)
chr2 (202-259)||(6065934-6065991)
chr2 (202-259)||(6066635-6066692)
chr2 (160-259)||(29720336-29720436)
[»] chr1 (2 HSPs)
chr1 (202-259)||(18543023-18543080)
chr1 (202-259)||(5225961-5226018)
[»] chr6 (2 HSPs)
chr6 (223-262)||(8304074-8304113)
chr6 (202-262)||(22531869-22531929)
[»] scaffold0017 (1 HSPs)
scaffold0017 (202-251)||(30542-30591)


Alignment Details
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 43283887 - 43283830
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43283887 tttaatctcagccattaaatcttaatctaaaggctgaaaattcattctcacattctca 43283830  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 43284572 - 43284624
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacat 254  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  43284572 tttaatctcagccattaaatcttaatctaaaggctgaaaatttattctcacat 43284624  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 3584600 - 3584657
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  3584600 tttaatctctgccattaaatcttaatctaaaggctgaaaattcattctcacattctca 3584657  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 3583786 - 3583729
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  3583786 tttaatctcagccattaaatcttaatccaaaggctgaaaattcattctcatattctca 3583729  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 39862311 - 39862368
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    |||||||||||||||||||| | |||  |||||||||||||||||||||| |||||||    
T  39862311 tttaatctcagccattaaatgtgaatccaaaggctgaaaattcattctcatattctca 39862368  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 35020222 - 35020168
Alignment:
Q  205 aatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    |||||||||| ||||||| |||| | |||||||||||| ||||||||||||||||    
T  35020222 aatctcagccgttaaatcataatctgaaggctgaaaatccattctcacattctca 35020168  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 39861840 - 39861783
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    |||||| ||||| ||||||| | ||| ||||||||||||||||||||||| |||||||    
T  39861840 tttaatatcagctattaaatgtgaatctaaaggctgaaaattcattctcatattctca 39861783  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 18590 - 18703
Alignment:
Q  141 ggaagaagaagagg--cgcgtg-ttattagaaatggagaggcagatcttt-tttaaattgagaaatttaatctcagccattaaatcttaatttaaaggct 236  Q
    ||||||||||||||  |||||| |||||||||| ||| | ||| ||| || ||| ||||||| | |||||||||||||||||||||||||| | ||||||    
T  18590 ggaagaagaagaggtgcgcgtggttattagaaacggaaaagcacatccttattttaattgagcattttaatctcagccattaaatcttaatctgaaggct 18689  T
Q  237 gaaaattcattctc 250  Q
    ||||||||||||||    
T  18690 gaaaattcattctc 18703  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29536223 - 29536264
Alignment:
Q  1 ggttgattgaaaacttaattttgtataataatattcaattag 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29536223 ggttgattgaaaacttaattttgtataataatattcaattag 29536264  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 18017 - 17965
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacat 254  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  18017 tttaatctcagccattaaatcttaatctgaaggctgaaaatccattctcacat 17965  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 6740045 - 6740006
Alignment:
Q  223 ttaatttaaaggctgaaaattcattctcacattctcatat 262  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  6740045 ttaatctaaaggctgagaattcattctcacattctcatat 6740006  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 6065991 - 6065934
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  6065991 tttaatctcagccattaaatcttaatccaaaggctgaaaattcattctcatattctca 6065934  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 6066635 - 6066692
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||| |||||||    
T  6066635 tttaatctcagccattaaatcttaatccaaaagctgaaaattcattctcatattctca 6066692  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 29720436 - 29720336
Alignment:
Q  160 gttattagaaatggagaggcagatc-ttttttaaattgagaaatttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctc 258  Q
    ||||||||||| ||||||||| | | |||||| |||||   | || |||||||||| ||||||| |||| | |||||||||||| |||||||||||||||    
T  29720436 gttattagaaacggagaggcacaacatttttttaattggccatttaaatctcagccgttaaatcataatctgaaggctgaaaatccattctcacattctc 29720337  T
Q  259 a 259  Q
    |    
T  29720336 a 29720336  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 18543080 - 18543023
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    |||||||  ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  18543080 tttaatcatagccattaaatcttaatctaaaggctaaaaattcattctcacattctca 18543023  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 5226018 - 5225961
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctca 259  Q
    |||||||  ||||||||||||||||| |||||||||||||| |||| |||||||||||    
T  5226018 tttaatcctagccattaaatcttaatctaaaggctgaaaatgcattttcacattctca 5225961  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 8304113 - 8304074
Alignment:
Q  223 ttaatttaaaggctgaaaattcattctcacattctcatat 262  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  8304113 ttaatctaaaggctgaaaattcattctcacattctcatat 8304074  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 22531869 - 22531929
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctcacattctcatat 262  Q
    |||||||||| |||||||||||||||  |||| || |||||| ||||||||||| ||||||    
T  22531869 tttaatctcaaccattaaatcttaatccaaagactaaaaatttattctcacattgtcatat 22531929  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 30591 - 30542
Alignment:
Q  202 tttaatctcagccattaaatcttaatttaaaggctgaaaattcattctca 251  Q
    |||||| |||||||||||||  ||||  ||||||||||||||||||||||    
T  30591 tttaatatcagccattaaatgataatgcaaaggctgaaaattcattctca 30542  T

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