View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9976_low_4 (Length: 238)
Name: NF9976_low_4
Description: NF9976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9976_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 3659853 - 3659647
Alignment:
| Q |
14 |
gcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcagatggaagttcctcaaatgatgaccaaggcgaggttttggagaatagaa |
113 |
Q |
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| T |
3659853 |
gcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcggatggaagttcctcaaatgatgaccaaggcgaggttttggagaatagaa |
3659754 |
T |
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| Q |
114 |
agtttgcagttgtagatgttgtggactcttatcagggtgttgaagatgacgaggaagtgctggtggaggacagtggaggatcaacacgtagtagcgatga |
213 |
Q |
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| T |
3659753 |
agtttgcagttgtagatgttgtggactcttctcagggtgttgaagatgacgaggaagtgctggtgggggacagtggaggatcaacacgtagtagcgatga |
3659654 |
T |
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| Q |
214 |
cggagat |
220 |
Q |
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||||||| |
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| T |
3659653 |
cggagat |
3659647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 3653449 - 3653396
Alignment:
| Q |
167 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagat |
220 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3653449 |
gaagttctggtggaggacagtggaggatcaacacgtagtagcgatgacggagat |
3653396 |
T |
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