View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9977_high_1 (Length: 316)
Name: NF9977_high_1
Description: NF9977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9977_high_1 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 36)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 18115882 - 18116178
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaa |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||| | ||||| | | |||||| |||||||| |
|
|
| T |
18115882 |
aatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctcctataaccaactacaagaatcaattccagaagaaa |
18115981 |
T |
|
| Q |
106 |
taggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcctt |
205 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||| |
|
|
| T |
18115982 |
taggccaacttgcccatattcaacaacttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaatctctcttccctaaattactt |
18116081 |
T |
|
| Q |
206 |
atctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||| |
|
|
| T |
18116082 |
atctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagatcatctagacttgcgtaattcagatttt |
18116178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 19333925 - 19334219
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||| | ||||| ||| || ||| ||||||| |
|
|
| T |
19333925 |
caatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcttataaccaactacaaggatcagttccagaagaa |
19334024 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcct |
204 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |
|
|
| T |
19334025 |
ataggccaactttcccatattcaacaacttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacctctcttccttaaattact |
19334124 |
T |
|
| Q |
205 |
tatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaat |
299 |
Q |
| |
|
||| |||||| ||||||||||||||| |||||||||||| ||| |||||||||||||| || ||||| ||| ||||| ||||| |||||||| |
|
|
| T |
19334125 |
tatttattggctctaataatttctctggtgaaatttcaaaattaactttttccaaactctatactttaggtttgctagacatgagttattcaaat |
19334219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 19461449 - 19461712
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaa |
105 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||| | ||||| | ||||| | | || ||| | |||||| |
|
|
| T |
19461449 |
aatatatacggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctcttataaccaactacaagaatcagttccaaaagaaa |
19461548 |
T |
|
| Q |
106 |
taggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcctt |
205 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||| |
|
|
| T |
19461549 |
taggccaacttgcccatattcaacaacttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacctctcttccctaaattactt |
19461648 |
T |
|
| Q |
206 |
atctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagt |
269 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19461649 |
atctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagt |
19461712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 17941870 - 17942167
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||| | ||||| |||| ||||| | | | | |
|
|
| T |
17941870 |
caatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctttatctctcttataaccaactacaaggactaattccaaatgga |
17941969 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcct |
204 |
Q |
| |
|
|||||||||||| | |||||||| |||| ||||||||||||||| ||||||||||||| ||||| | |||||||||||| ||||||| ||||||| | |
|
|
| T |
17941970 |
ataggccaactaccaaatattcaatacctcgatctctctgaaaacgaactacaaggatcaattcccacgactctaggaaacctctcatcattaaattggt |
17942069 |
T |
|
| Q |
205 |
tatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
17942070 |
tatttattggttctaataatttctctggtgaaatttcaaatttaacttttttcaaactctctagtttagactcactagacttgagtaattcaagtttt |
17942167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 19414100 - 19414397
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| | |||||| | ||||| || || ||| ||| | | |
|
|
| T |
19414100 |
caatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatcaaataaccaactacaagggtcagttccagatgga |
19414199 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcct |
204 |
Q |
| |
|
|||||| || || | |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||| || |
|
|
| T |
19414200 |
ataggcaaattagcacatattcaacacctcgatctctctgaaaaccaactacaaggattcattctttcaactctaggaaatctcccatccttaaattact |
19414299 |
T |
|
| Q |
205 |
tatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||||||||||||| |||||||||||| | | |||| ||||||| ||||||||||||||||||||||| || | |||||||||||||||||| |||| |
|
|
| T |
19414300 |
tatctattggttcgaataatttctctggtaatattttaaatttatatttttccaaactctctagtttaaatcatctagacttgagtaattcaagtttt |
19414397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 19399624 - 19399921
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||| | ||||||| |||||||||||||||| ||| ||| |
|
|
| T |
19399624 |
caatatatatggtgagataccttcaagcttgctaacccttcaaaatttgaaacaccttgatctcgttgataacaaactacagggaccaattcaagatgaa |
19399723 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcct |
204 |
Q |
| |
|
||||| |||||| | |||||| || | |||| ||| || ||| || || | ||||||||||||||||||||| |||| |||||||||| || |
|
|
| T |
19399724 |
ataggtcaactagcacatattgaatatcttggtcttgcttggaacatgttaagtggtttcattccttcaactctaggaaacctctcttccttaaattact |
19399823 |
T |
|
| Q |
205 |
tatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19399824 |
tatctattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattcactagacttgagtaattcaaatttt |
19399921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 82 - 302
Target Start/End: Complemental strand, 17727544 - 17727324
Alignment:
| Q |
82 |
tacagggaccaattctagaagaaataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctagg |
181 |
Q |
| |
|
||||||||||||||| | | | ||||||||||| | ||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17727544 |
tacagggaccaattccatatgggataggccaacttgcacatattcaagacctcgatctctctaaaaaccaactacaaggatcaattccttcaactctagg |
17727445 |
T |
|
| Q |
182 |
aaacatctcatccttaaattccttatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagatttttta |
281 |
Q |
| |
|
|||| ||||||| |||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
17727444 |
aaacctctcatctttaattttcttatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagattcacta |
17727345 |
T |
|
| Q |
282 |
gacttgagtaattcaaatttt |
302 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
17727344 |
caattgagtaattcaaatttt |
17727324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 82 - 302
Target Start/End: Complemental strand, 19028773 - 19028553
Alignment:
| Q |
82 |
tacagggaccaattctagaagaaataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctagg |
181 |
Q |
| |
|
||||||||||||||| | | | ||||||||||| | ||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19028773 |
tacagggaccaattccatatgggataggccaacttgcacatattcaagacctcgatctctctaaaaaccaactacaaggatcaattccttcaactctagg |
19028674 |
T |
|
| Q |
182 |
aaacatctcatccttaaattccttatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagatttttta |
281 |
Q |
| |
|
|||| ||||||| |||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
19028673 |
aaacctctcatctttaattttcttatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagattcacta |
19028574 |
T |
|
| Q |
282 |
gacttgagtaattcaaatttt |
302 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
19028573 |
caattgagtaattcaaatttt |
19028553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 18146746 - 18147043
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| | | | | |
|
|
| T |
18146746 |
caatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttaatctctataataacaaactacacggatcaattccaaatgga |
18146845 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcct |
204 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| || ||| || || | ||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
18146846 |
ataggccaacttgcacatattcaataccttgatctttcatggaacatgttaagtggtttcattccttcaactctaggaaacctctcatccttaaattact |
18146945 |
T |
|
| Q |
205 |
tatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||| ||||| ||||||||||||||| || ||||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
18146946 |
tatggattggctctaataatttctctggtgcaatttcaaaattaactttttccaacctctctagtttagattcactagacatgagtaattcaagtttt |
18147043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 14896474 - 14896180
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||| |||||| ||| ||||| ||||| ||| |||||| ||| | |
|
|
| T |
14896474 |
caatatacatggtgagataccttcaagcttgctaaaccttcaaattttaagacaccttgatctctctaaaaacaacctacaaggatcaattccagataga |
14896375 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcct |
204 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||| || ||| || || | ||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
14896374 |
atagggcaactaccaaatattcaacaccttgatctttcaatgaacatgttaagcggtttcattccttcaactctaggaaacctctcatccttaatttcct |
14896275 |
T |
|
| Q |
205 |
tatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaat |
299 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| || ||||| |||||||||||||| |
|
|
| T |
14896274 |
tatccattggctctaataatttctctgctgaaatttcaaatttaactttttccaaacactctagtttagtttcactagacatgagtaattcaaat |
14896180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 128 - 302
Target Start/End: Original strand, 18103385 - 18103559
Alignment:
| Q |
128 |
acaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttc |
227 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
18103385 |
acaccttgatctctcttataaccaactacaaggatcaattccctcaactctaggaaacctctcatccttaaattacttatttattggctctaataatttc |
18103484 |
T |
|
| Q |
228 |
tctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||| | ||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
18103485 |
tctggtaaaatttcaaatttgcatttttccaaactctgtagtttagatgaactagacttgagtaactcaaatttt |
18103559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 104 - 302
Target Start/End: Original strand, 19464371 - 19464569
Alignment:
| Q |
104 |
aataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcc |
203 |
Q |
| |
|
||||||||||||| | ||||||||| | ||||||||||| |||||||| ||||||||||| ||||| || || ||||||||| ||||||| |||||| | |
|
|
| T |
19464371 |
aataggccaactagcacatattcaagagcttgatctctcggaaaaccagctacaaggatcaattccgtcgacactaggaaacctctcatctttaaatgac |
19464470 |
T |
|
| Q |
204 |
ttatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
|||||||| || ||||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
19464471 |
ttatctatcggctctaacaatttctcaggtgaaatttcaaatttaactttttccaaactctctagtttacattatttagacttgagtaattcaaatttt |
19464569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 136 - 302
Target Start/End: Original strand, 18016069 - 18016235
Alignment:
| Q |
136 |
atctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttctctaatga |
235 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||| ||||||||||||||| ||| |
|
|
| T |
18016069 |
atctctctaataaccaactacaaggatctattccttcaactctaggaaacctgtcatccttaatttccttatcgattggctctaataatttctctggtga |
18016168 |
T |
|
| Q |
236 |
aatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||||||| | || |||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
18016169 |
aatttcacaattttttttttccaaactctctagtttaaatcatttagacttgagtaattcaaatttt |
18016235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 19380809 - 19381107
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||| || |||| |||| | || |||||| ||||||||| ||||| ||| ||| |
|
|
| T |
19380809 |
caatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggactaattccagatgaa |
19380908 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcct |
204 |
Q |
| |
|
|||||||||||| | |||||| || | || ||||| || ||| || || | || || | ||||||||||||| ||||||||||| ||| | |
|
|
| T |
19380909 |
ataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgt |
19381008 |
T |
|
| Q |
205 |
tatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaattttt |
303 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19381009 |
tatctattggctctaataatttctctggtgaaatttctaaattaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttt |
19381107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 17949745 - 17950045
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataaca----agctacagggaccaattctagaa |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| | ||||| ||| ||||| |||| |
|
|
| T |
17949745 |
aatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcaaataacaaattaactacaaggatcaattatagat |
17949844 |
T |
|
| Q |
102 |
gaaataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatct-attccttcaactctaggaaacatctcatccttaaat |
200 |
Q |
| |
|
||| ||||||||| | || || || |||||||| | || | ||| | || ||| ||||||||||||||||||||| ||||||||||| || |
|
|
| T |
17949845 |
agaattggccaactaccaaattttgaataccttgatatttccgcgaacatgtttggtgg-tctcattccttcaactctaggaaacctctcatccttatat |
17949943 |
T |
|
| Q |
201 |
tccttatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatt |
300 |
Q |
| |
|
| |||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| | | |||||||||| ||||||||||||||||||||| |
|
|
| T |
17949944 |
tacttatctattggctctaataatttctctggtaaaatttcaaatttacatttttccaaattatttagtttagatgaactagacttgagtaattcaaatt |
17950043 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
17950044 |
tt |
17950045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 168 - 302
Target Start/End: Original strand, 18165235 - 18165369
Alignment:
| Q |
168 |
ccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctcta |
267 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| | |
|
|
| T |
18165235 |
ccttcgactctaggaaacctctcatccttaaatgacttatctattggctctaataatttctctggtgaaatttcaaatttacattttgccaaactctcca |
18165334 |
T |
|
| Q |
268 |
gtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
18165335 |
atttagattcactagacttgagtaattcaaatttt |
18165369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 19393069 - 19393362
Alignment:
| Q |
9 |
atatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaatag |
108 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| | | || | ||||| ||| |||||| ||| | ||||| |
|
|
| T |
19393069 |
atatatggtgagataccttcaagtttgctaaaccttcaaaatttgagataccttaatctctttgaaaatcaactacaaggatcaattcaagatggaatag |
19393168 |
T |
|
| Q |
109 |
gccaactaacccatattcaacaccttgatctctctgaaaaccaactacaa-ggatctattccttcaactctaggaaacatctcatccttaaattccttat |
207 |
Q |
| |
|
||||||| ||| ||||| |||||||| | || ||||| || | | || | ||||||||||||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
19393169 |
gccaacttgaacatcttcaataccttgatgtttc-gaaaaacatgttgagtggttttattccttcaactttaggaaacctctcatccttaaattacttat |
19393267 |
T |
|
| Q |
208 |
ctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||||| | ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||| |||| |
|
|
| T |
19393268 |
ctattagcgataacaatttctctggtgaaatttcaaatttacatttttccaaactccatagtttagtttcactaaacttgagtaattcaattttt |
19393362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 19375698 - 19375835
Alignment:
| Q |
165 |
attccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactct |
264 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| || ||| |||||||||||||| |
|
|
| T |
19375698 |
attcctttaactctaggaaacctctcatccttaaatttgttatctattggctctaataatttctctggtgaaatttctaaattaactttttccaaactct |
19375797 |
T |
|
| Q |
265 |
ctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19375798 |
ctagtttagattcactagacttgagtaattcaaatttt |
19375835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 19351311 - 19351606
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaa |
105 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||||||||| ||||||||||| ||||| | ||||| | ||||| ||| |||||| ||| | || |
|
|
| T |
19351311 |
aatatatatggtaagataccttcaagcttactaaaccttcaaaaactgagacaccttgatctcaaatataaccaactacaaggatcaattccagatggaa |
19351410 |
T |
|
| Q |
106 |
taggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcctt |
205 |
Q |
| |
|
|| |||||||| | |||||||| |||||||||| || ||| || || | ||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
19351411 |
taagccaactaccaaatattcaataccttgatctttcatggaacatgttaagtggtttcattccttcaactctaggaaacctctcatccttaatttcctt |
19351510 |
T |
|
| Q |
206 |
atctattggttctaataatttctctaatgaaatttca-aatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||| ||||| |||||| ||||| || |||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
19351511 |
atcgattggctctaatcatttcactggtgaaatttcacaattt--ttttttccaaactctctagtttagaatggctagacttgagtaattcaaatttt |
19351606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 275
Target Start/End: Original strand, 16677136 - 16677405
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaa |
105 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||| | | ||| | ||||| | |||||| ||| |||| |
|
|
| T |
16677136 |
aatatacatggtgagataccttcaagcttgttaaaccttcaacatttgagacaccttgatgtctctcaaaaccaactacaactatcaattccagatgaaa |
16677235 |
T |
|
| Q |
106 |
taggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcctt |
205 |
Q |
| |
|
|||| |||||| | ||||||||| |||||||||| || ||| || || | ||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
16677236 |
taggtcaactagcacatattcaagaccttgatctttccatgaacatgttaagtggtttcattccttcaactctaggaaacctctcatctttaaattcctt |
16677335 |
T |
|
| Q |
206 |
atctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagat |
275 |
Q |
| |
|
||||||||| |||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16677336 |
atctattggcaataatgatttctctggtgaagtttcaaatttaactttttccaaactctctagtttagat |
16677405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 18108356 - 18108652
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaa |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| | ||||| ||| ||||| |||| || |
|
|
| T |
18108356 |
aatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcaaataaccaactacaaggatcaattatagatagaa |
18108455 |
T |
|
| Q |
106 |
taggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatct-attccttcaactctaggaaacatctcatccttaaattcct |
204 |
Q |
| |
|
| ||||||| | || ||||| |||||||| | || | ||| | | | | ||| |||||||||||| |||||||| |||| |||||||| || |
|
|
| T |
18108456 |
tttcccaactaccaaattttcaataccttgatatatccgcgaac-atgtttagtggtctcattccttcaactgtaggaaacctctcttccttaaagcact |
18108554 |
T |
|
| Q |
205 |
tatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||| |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
18108555 |
tatttattggctctaataatttctctggcgaaatttcaaatttacatttttccaatctctctactttattttcactagacttgagtaattcaaatttt |
18108652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 25462974 - 25463263
Alignment:
| Q |
13 |
atggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaataggcca |
112 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||| |||| | | ||||| | ||||||||||||||| ||| | ||||||||| |
|
|
| T |
25462974 |
atggtgacataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatctcataaccaattacagggaccaattccagatggaataggcca |
25463073 |
T |
|
| Q |
113 |
actaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattccttatctatt |
212 |
Q |
| |
|
|||| | |||||||| |||||||||| || ||| || || | || |||| |||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
25463074 |
actaccaaatattcaataccttgatctttccattaacatgttaattggtttaatccctttaactataggaaacctctcatccttaacttccttatctatc |
25463173 |
T |
|
| Q |
213 |
ggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
|| |||||||| |||||| | ||||||||| ||| ||| |||||||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
25463174 |
ggctctaataacttctctggggcaatttcaaaattaactttctccaaactctttagtttagattcactagacttgagtaattcaactttt |
25463263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 302
Target Start/End: Original strand, 19436997 - 19437171
Alignment:
| Q |
128 |
acaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttc |
227 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| ||||| |||||||| |||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
19436997 |
acaccttgatctctcttataaccaactacaaggatcaattccagatggaataggaaacctctcatccttaagttacctatctattggttctaataatttc |
19437096 |
T |
|
| Q |
228 |
tctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
||| |||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
19437097 |
tctggtgaaatttcaaaattaactttttccaaactctctagtttagattggctcgacttgagcaattcaaatttt |
19437171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 18144258 - 18144374
Alignment:
| Q |
156 |
caaggatctattccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttctctaatgaaatttcaaatttacattttt |
255 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||| ||||||| || |||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
18144258 |
caaggatctattccttcaactccaggaacc-tctcttccttaatttacttatctattggctctaacaatttctctggtgaaatttcaaatttacattttt |
18144356 |
T |
|
| Q |
256 |
ccaaactctctagtttag |
273 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18144357 |
ccaaactctctagtttag |
18144374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 18103334 - 18103425
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattc |
96 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||| | ||||| ||| |||||| |
|
|
| T |
18103334 |
caatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcttataaccaactacaaggatcaattc |
18103425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 19424763 - 19424900
Alignment:
| Q |
165 |
attccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactct |
264 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||| ||||| ||||| |||||||| ||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
19424763 |
attccttcaactttaggaaacctctcatcattaaatcacttatggattggctctaataaattctcaggtgaaatttcaaaattaactttttccaaactct |
19424862 |
T |
|
| Q |
265 |
ctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |
|
|
| T |
19424863 |
ctagtttagaagaactagacttgagtaattcaactttt |
19424900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 17727765 - 17727601
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||||||||||| | ||||||| ||||| | | ||| | ||||| || || ||| | | || |
|
|
| T |
17727765 |
caatatacatggtgagataccttctagcttggtaaaccttcaaaatttaacacaccttggtctctctgaaaaccaactacaagggtcagttccatatgat |
17727666 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattcc |
169 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
17727665 |
ataggcagactagtacatattcaacacctcgatctctctgaaaaccaactacgaggatcaattcc |
17727601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 18016010 - 18016082
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataac |
77 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
18016010 |
caatatacatggtgagataccttctagcttgctaaaccttcaaaatttgagacaacttcatctctctaataac |
18016082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 19028994 - 19028830
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||||||||||| | ||||||| ||||| | | ||| | ||||| || || ||| | | || |
|
|
| T |
19028994 |
caatatacatggtgagataccttctagcttggtaaaccttcaaaatttaacacaccttggtctctctgaaaaccaactacaagggtcagttccatatgat |
19028895 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattcc |
169 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
19028894 |
ataggcagactagtacatattcaacacctcgatctctctgaaaaccaactacgaggatcaattcc |
19028830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 19436954 - 19437050
Alignment:
| Q |
13 |
atggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaatagg |
109 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||| | ||||| ||| |||||| ||| | |||||| |
|
|
| T |
19436954 |
atggggagataccttctagcttgctaaaccttcaaaatttgagacaccttgatctctcttataaccaactacaaggatcaattccagatggaatagg |
19437050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 18144146 - 18144255
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaa |
105 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||| || | |||| ||||| |||||| | ||||| || |||| ||| || ||| |||||||| |
|
|
| T |
18144146 |
aatatatatggtgacttaccttcaagcttgctaaaccttcagaaatcgagataccttgatctctttcataaccagttacaaggatcagttccagaagaaa |
18144245 |
T |
|
| Q |
106 |
taggccaact |
115 |
Q |
| |
|
|||||||||| |
|
|
| T |
18144246 |
taggccaact |
18144255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 19375611 - 19375672
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatct |
67 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
19375611 |
aatatatatggtgagataccttcaagcttgctaaaccttccaaatttgagacaacttgatct |
19375672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 19424532 - 19424596
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctct |
69 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
19424532 |
caatatacatggtgggataccttcaagcttgctaaaccttcaaaatttgacataccttgatctct |
19424596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 18165072 - 18165120
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttg |
53 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
18165072 |
caatataaatggtgagataccttcaagcttgctaaaacttcaaaatttg |
18165120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 19424585 - 19424624
Alignment:
| Q |
130 |
accttgatctctctgaaaaccaactacaaggatctattcc |
169 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
19424585 |
accttgatctctctgaaaaccaactataaggatcaattcc |
19424624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 19407112 - 19407145
Alignment:
| Q |
36 |
ctaaaccttcaaaatttgagacaccttaatctct |
69 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
19407112 |
ctaaaccttcaaaatttgagacaccttgatctct |
19407145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 297
Target Start/End: Complemental strand, 2710660 - 2710368
Alignment:
| Q |
5 |
caatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaa |
104 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||| |||| |||||||||||| ||| |||| | ||||||| | ||||| |||||||||| ||| ||| |
|
|
| T |
2710660 |
caatatacatggtgagataccttctagcttgttaaagcttcgaaatttgagacaactttatctttctaataaccaactacaaggaccaattcaagatgaa |
2710561 |
T |
|
| Q |
105 |
ataggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcct |
204 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||| || ||| || || | ||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
2710560 |
ataggccaactagcatatattcaataccttgatctttccatgaacatgttaagcggtttcattccttcaactctaggaaacctctcatccttaaagtcct |
2710461 |
T |
|
| Q |
205 |
tatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaa |
297 |
Q |
| |
|
|| |||||| ||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
2710460 |
tacttattggcactaatcatttttctggtgaaatttcaaatttaactttttccaaactctctagtttagattcactagacgtgagtagttcaa |
2710368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 15535609 - 15535746
Alignment:
| Q |
165 |
attccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactct |
264 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| || || |||||| ||| |||||||||||||| |
|
|
| T |
15535609 |
attccttcaactctaggaaacctctcatccttaaattccttatctattggatctaataatttatctggtgcaaattcaaaattaactttttccaaactct |
15535708 |
T |
|
| Q |
265 |
ctagtttagattttttagacttgagtaattcaaatttt |
302 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
15535709 |
ctggtttagattcactagacttgagtaattcaaatttt |
15535746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 15532279 - 15532358
Alignment:
| Q |
17 |
tgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattc |
96 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||| |||| |||||| ||||||| | ||||| ||| |||||| |
|
|
| T |
15532279 |
tgagataccttcaagtttgctaaatcttcaaaatttgagaatccttgatctctctaataaccaactacaaggatcaattc |
15532358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 299
Target Start/End: Complemental strand, 4186 - 3893
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaa |
105 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| |||||| | | ||| | ||||| ||| || || | | | || |
|
|
| T |
4186 |
aatatatatggtgagatacctcgtagcttgctaaaccttcaaaatttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaa |
4087 |
T |
|
| Q |
106 |
taggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcctt |
205 |
Q |
| |
|
|||| |||||| | ||||||||||||||||||| || ||| || || | |||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
4086 |
taggtcaactagcaaatattcaacaccttgatctttccatcaacatgttaagtggtttcattcctgtaactctaggaaacctctcatccttacattcctt |
3987 |
T |
|
| Q |
206 |
atctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaat |
299 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
3986 |
atctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaat |
3893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 299
Target Start/End: Complemental strand, 3656 - 3363
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaa |
105 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| |||||| | | ||| | ||||| ||| || || | | | || |
|
|
| T |
3656 |
aatatatatggtgagatacctcgtagcttgctaaaccttcaaaatttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaa |
3557 |
T |
|
| Q |
106 |
taggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcctt |
205 |
Q |
| |
|
|||| |||||| | ||||||||||||||||||| || ||| || || | |||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
3556 |
taggtcaactagcaaatattcaacaccttgatctttccatcaacatgttaagtggtttcattcctgtaactctaggaaacctctcatccttacattcctt |
3457 |
T |
|
| Q |
206 |
atctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaat |
299 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
3456 |
atctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaat |
3363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 274
Target Start/End: Complemental strand, 13666906 - 13666765
Alignment:
| Q |
133 |
ttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttctctaa |
232 |
Q |
| |
|
||||||||| ||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
13666906 |
ttgatctctttgaaaacaacctacaaggatcaattccttcaactctaggaaacctctcatccttaaattacttatctattagctctaataatttctctgg |
13666807 |
T |
|
| Q |
233 |
tgaaatttcaaatttacatttttccaaactctctagtttaga |
274 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
13666806 |
tgaaatttcaaatttaactttttctaaactctctagtttaga |
13666765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 6 - 299
Target Start/End: Original strand, 5320 - 5613
Alignment:
| Q |
6 |
aatatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattctagaagaaa |
105 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||||||||||||||||||| ||| |||||| | | ||| | ||||| ||| || || | | | || |
|
|
| T |
5320 |
aatatatatggcgagataccttctagcatgctaaaccttcaaaatttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaa |
5419 |
T |
|
| Q |
106 |
taggccaactaacccatattcaacaccttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacatctcatccttaaattcctt |
205 |
Q |
| |
|
|||| |||||| | ||||||||||||||||||| || ||| || || | |||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
5420 |
taggtcaactagcaaatattcaacaccttgatctttccatcaacatgttaggtggtttcattcctgtaactctaggaaacctctcatccttacattcctt |
5519 |
T |
|
| Q |
206 |
atctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactctctagtttagattttttagacttgagtaattcaaat |
299 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
5520 |
atctactggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaat |
5613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 291
Target Start/End: Original strand, 8459624 - 8459750
Alignment:
| Q |
165 |
attccttcaactctaggaaacatctcatccttaaattccttatctattggttctaataatttctctaatgaaatttcaaatttacatttttccaaactct |
264 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||| |||||||||||||||| || ||||| ||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
8459624 |
attccttctactcttggaaacctctcatccttatattccttatctattggctcaaataacttctctagtgaaatttcaaacagaaccttttccaaactct |
8459723 |
T |
|
| Q |
265 |
ctagtttagattttttagacttgagta |
291 |
Q |
| |
|
|||| ||| |||| ||||||| |||| |
|
|
| T |
8459724 |
atagtctaggttttctagacttaagta |
8459750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 8459394 - 8459483
Alignment:
| Q |
7 |
atatatatggtgagataccttctcgcttgctaaaccttcaaaatttgagacaccttaatctctataataacaagctacagggaccaattc |
96 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| || |||||| |||||||||||||||| |||||| | ||||| | ||||| ||| |||||| |
|
|
| T |
8459394 |
atatatatggcgagatgccttcaagcttgttataccttccaaatttgagacaccttgatctctcttataaccaactacaaggatcaattc |
8459483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 8459443 - 8459484
Alignment:
| Q |
128 |
acaccttgatctctctgaaaaccaactacaaggatctattcc |
169 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
8459443 |
acaccttgatctctcttataaccaactacaaggatcaattcc |
8459484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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