View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9977_low_3 (Length: 229)
Name: NF9977_low_3
Description: NF9977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9977_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 2904790 - 2904564
Alignment:
| Q |
3 |
gagcagaacctgtgaatttagtacgaacaaaattacagtgtgtgataattctagctcattgttaccaaaaacagccgccaaatccaacgccccactgaaa |
102 |
Q |
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| T |
2904790 |
gagcaaaacctgtaaatttagtacaaacaaaataacagtgtgtgataattctagctcattgttaccaaaaacagccgccaaatccaacgccccactgaaa |
2904691 |
T |
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| Q |
103 |
gttaatctaatatagactgtcccagctccacaaggatccaaccgtaatcaaacatcttcaccactacgttacagagatatacaaaaacagttagtcgcta |
202 |
Q |
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| T |
2904690 |
gttaatctaatatagactgtcccagctccacaaggatccagccgtaatcaaacatcttcaccactacgttacagagatatacaaaaccagttagtcgcta |
2904591 |
T |
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| Q |
203 |
actagatgaatcaatctccaaaacaat |
229 |
Q |
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| T |
2904590 |
actagatgaatcaatctccaaaacaat |
2904564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 2852758 - 2852532
Alignment:
| Q |
3 |
gagcagaacctgtgaatttagtacgaacaaaattacagtgtgtgataattctagctcattgttaccaaaaacagccgccaaatccaacgccccactgaaa |
102 |
Q |
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||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2852758 |
gagcaaaacctgtaaatttagtacaaacaaaataacagtgtgtgataattctagcacattgttaccaaaaacagccgccaaatccaacgccccactgaaa |
2852659 |
T |
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| Q |
103 |
gttaatctaatatagactgtcccagctccacaaggatccaaccgtaatcaaacatcttcaccactacgttacagagatatacaaaaacagttagtcgcta |
202 |
Q |
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| T |
2852658 |
attaatctaatatagactgtcccagctccacaaggatccagccgtaatcaaacatcttcaccactacattacagaaatatacaaaaccagttagtcgcta |
2852559 |
T |
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| Q |
203 |
actagatgaatcaatctccaaaacaat |
229 |
Q |
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| T |
2852558 |
aatagatgaatcaatctccaaaacaat |
2852532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 42951082 - 42951034
Alignment:
| Q |
62 |
tgttaccaaaaacagccgccaaatccaacgccccactgaaagttaatct |
110 |
Q |
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| T |
42951082 |
tgttaccaaaaacagccgccaaatccaacgctccactgaaatttaatct |
42951034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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