View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9978_high_4 (Length: 251)
Name: NF9978_high_4
Description: NF9978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9978_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 12607773 - 12608002
Alignment:
| Q |
1 |
cttgaagaggttcagatatgttacccctataagcaatctattaatcaattgttggcatataatattagttctaatgaatgaaattcagaatgtgaagttc |
100 |
Q |
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| T |
12607773 |
cttgaagaggttcagatatgttaccc--------aatctattaatctattgttggcatataatattagttctaatgaatgaaattcagaatgtgaagttc |
12607864 |
T |
|
| Q |
101 |
tattctttcnnnnnnnnnn-tgtgaagttctataaacatgattaatatgaaatcaattttaattccaccttaaggttttctgaaaactctctcatccatc |
199 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12607865 |
tattctttcaaaaagaaaaatgtgaagttctataaacatgattaagatgaaatcaattttaattccaccttaaggttttctgaaaactctcttatccatt |
12607964 |
T |
|
| Q |
200 |
ttctctatcaacaaatatgatagtcatatgttagcaat |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
12607965 |
ttctctatcaacaaatatgatagtcatatgttagcaat |
12608002 |
T |
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