View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9978_high_6 (Length: 250)
Name: NF9978_high_6
Description: NF9978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9978_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 36530041 - 36529840
Alignment:
| Q |
5 |
tttctcttcaatcttacggtatttacggtccaacttggtggggtcttgaaccagaccactgccctttggctaaatgccctacagctccaggtgtacatgc |
104 |
Q |
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| T |
36530041 |
tttctcttcaatcttacggtatttatggtccaacttggtggggtcttgaaccagaccactgccctttggctaaatgccctacagctccaggtgtacatgc |
36529942 |
T |
|
| Q |
105 |
agagggttgtcctgttccctgactacaatgttaccattccatcaacaacattggcaagtgaatatactataggacatgtaaatgtacaaaactaagaacc |
204 |
Q |
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| T |
36529941 |
agagggttgtcctgttccctgactacaatgttaccattccatcaacaacattggcaagtgaatatactataggacatgtaaatgtacaaaactaagaacc |
36529842 |
T |
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| Q |
205 |
tg |
206 |
Q |
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|| |
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| T |
36529841 |
tg |
36529840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 36523208 - 36523066
Alignment:
| Q |
5 |
tttctcttcaatcttacggtatttacggtccaacttggtggggtcttgaaccagaccactgccctttggctaaatgccctacagctccaggtgtacatgc |
104 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||| |||| || |||||||| |||| ||| |||||| |||||||||||||||| |
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| T |
36523208 |
tttctcttcaatcttatggtatttatggtccaacttggtggggtcttgaagcagatcattgccctttagctagatgtcctacatctccaggtgtacatgc |
36523109 |
T |
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| Q |
105 |
agagggttgtcctgttccctgactacaatgttaccattccatc |
147 |
Q |
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| T |
36523108 |
agagggttgtcatgttctttgacttccatgtaaccattccatc |
36523066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 36535653 - 36535489
Alignment:
| Q |
5 |
tttctcttcaatcttacggtatttacggtccaacttggtggggtcttgaaccagaccactgccctttggctaaatgccctacagctccaggtgtacatgc |
104 |
Q |
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||||||||||||| || ||||||| |||||||| |||||||| |||||| |||| |||||||||||||||| ||| |||||||||||||||||| | || |
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| T |
36535653 |
tttctcttcaatcctatggtatttttggtccaacatggtggggccttgaagcagatcactgccctttggctagatgtcctacagctccaggtgtatacgc |
36535554 |
T |
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| Q |
105 |
agagggttgtcctgttccctgactacaatgttaccattccatcaacaacattggcaagtgaatat |
169 |
Q |
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||||||||||||||||||||||| | ||| || |||||||||| ||| |||| ||| ||||||| |
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| T |
36535553 |
tgagggttgtcctgttccctgacttccatgataacattccatcagcaatattgccaaatgaatat |
36535489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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