View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9978_low_1 (Length: 411)
Name: NF9978_low_1
Description: NF9978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9978_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 33 - 402
Target Start/End: Original strand, 39640917 - 39641269
Alignment:
| Q |
33 |
tcaaagggttaacaccaaaataggagattgatcataatagtccgtaaacgtggtagatcacttaacacaaatcacgtgtaatgnnnnnnnggcccatgag |
132 |
Q |
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| T |
39640917 |
tcaaagggttaacaccaaaattggagattgatcataatagtccgtaaacgtggtagatcacttaacacaaatcacgtgtaatgtttttttggcccatgag |
39641016 |
T |
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| Q |
133 |
ttgcataaggagtgtagtattttgcattgtcaatagagactgttttcaaagaatctcagggaattatagtggttttctcctctcaactaggcattttaca |
232 |
Q |
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| T |
39641017 |
ttgcataaggagtgtagtattttgcattgtcaatagagactgttttcaaagaatctcagggcattatagtggttttctcctctcaactaggcattttaca |
39641116 |
T |
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| Q |
233 |
tgcacaaaaatcaatatccaaactttgaactacttgctgatgagaactacttgcttactagactagagccgccgttgctcaagtcgtctagagttggtaa |
332 |
Q |
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| T |
39641117 |
tgcacaaaaatcaatatccaaactttg-----------------aactacttgcttactagactagagccgccgttgctcaagtcgtctagagttggtaa |
39641199 |
T |
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| Q |
333 |
aaacagtgtaacataagagaaaggatgagggtttgtgtacaagataaatcaactaactaaaatcctatgc |
402 |
Q |
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| T |
39641200 |
aaacagtgtaacataagagaaaggatgagggtttgtgtacaagataaatcaactaactaaaatcctatgc |
39641269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 39681291 - 39681227
Alignment:
| Q |
49 |
aaaataggagattgatcataatagtccgtaaacgtggtagatcacttaacacaaatcacgtgtaa |
113 |
Q |
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||||||| || ||||||| |||||||| |||||||||| |||| ||||||||||||| |||||| |
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| T |
39681291 |
aaaatagaagtttgatcaaaatagtccacaaacgtggtaaatcagttaacacaaatcatgtgtaa |
39681227 |
T |
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