View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9978_low_14 (Length: 245)
Name: NF9978_low_14
Description: NF9978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9978_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 19912406 - 19912186
Alignment:
| Q |
18 |
aagataacacttttatgaggaaatgtcaggttcagagaaccgtcgagagaagtttgctggcttgactcttgacgacgtcttagccaatcaaaagagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19912406 |
aagataacacttttatgaggaaatgtcaggttcagagaaccgtcgagagaagtttgctggcttgactcttgacgacgtcttagccaatcaaaagagatta |
19912307 |
T |
|
| Q |
118 |
gcaactgcaccacctagcaaaccatcacctccgaagagtcgaacgcttgtagacaccatcaaagaagacgagatcaacaaaaaagaccgcaggtaacaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19912306 |
gcaactgcaccacctagcaaaccatcacctccgaagagtcgaacgcttgtagacaccatcaaagaagacgagatcaacaaaaaagaccgcaggtaacaac |
19912207 |
T |
|
| Q |
218 |
atattattgtaataacaccat |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19912206 |
atattattgtaataacaccat |
19912186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University