View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9978_low_15 (Length: 238)
Name: NF9978_low_15
Description: NF9978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9978_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36530120 - 36530341
Alignment:
| Q |
1 |
ctttgaactttctataaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacagatctcacaggtgggatgtcagatgcacctgc |
100 |
Q |
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| T |
36530120 |
ctttgaactttctataaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacagatctcacaggtgggatgtcagatgcacctgc |
36530219 |
T |
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| Q |
101 |
aatgataataggaatgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacatgggaactggtgcgattagaccgataaggaaa |
200 |
Q |
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| T |
36530220 |
aatgataataggaatgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacacgggaactggtgcgattagaccgataaggaaa |
36530319 |
T |
|
| Q |
201 |
aaccaattcaattcgggataaa |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36530320 |
aaccaattcaattcgggataaa |
36530341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 36523289 - 36523496
Alignment:
| Q |
3 |
ttgaactttctataaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacagatctcacaggtgggatgtcagatgcacctgcaa |
102 |
Q |
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| T |
36523289 |
ttgaactttctataaacatagaaattgaaaaccattccaacaattccccaagtaatgtaattcacagatctcactggtggaatgccagatgcacctgcgg |
36523388 |
T |
|
| Q |
103 |
tgataataggaatgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacatgggaactggtgcgattagaccgataaggaaaaa |
202 |
Q |
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| T |
36523389 |
cgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataaggaaaaa |
36523488 |
T |
|
| Q |
203 |
ccaattca |
210 |
Q |
| |
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|||||||| |
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| T |
36523489 |
ccaattca |
36523496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 36535735 - 36535941
Alignment:
| Q |
4 |
tgaactttctataaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacagatctcacaggtgggatgtcagatgcacctgcaat |
103 |
Q |
| |
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| T |
36535735 |
tgaactttctataaacatagaaattgaaaaacattccaacaattccccaagtaatataattcacagatctcctgggaggaatagtagatgcacctacaat |
36535834 |
T |
|
| Q |
104 |
gataataggaatgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacatgggaactggtgcgattagaccgataaggaaaaac |
203 |
Q |
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| T |
36535835 |
gataataggaatgttgataagtttaatccacttgtggttaggaaatttgatagaaagaagccacaccggtacaggtgcaattaggccaataaggaaaaac |
36535934 |
T |
|
| Q |
204 |
caattca |
210 |
Q |
| |
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||||||| |
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| T |
36535935 |
caattca |
36535941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 42075303 - 42075187
Alignment:
| Q |
96 |
cctgcaatgataataggaatgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacatgggaactggtgcgattagaccgataa |
195 |
Q |
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|||||||||||||| || ||||||| || || |||||||||| |||| || ||||| ||| |||||||||| ||||| || || | ||||||||| | |
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| T |
42075303 |
cctgcaatgataattggcatgttgacgagttcaatccactttcggtttgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatga |
42075204 |
T |
|
| Q |
196 |
ggaaaaaccaattcaat |
212 |
Q |
| |
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| T |
42075203 |
ggaaaaaccaattcaat |
42075187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 42060087 - 42059892
Alignment:
| Q |
15 |
taaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacagatctcacaggtgggatgtcagatgcacctgcaatgataataggaa |
114 |
Q |
| |
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||||||||||||||||| || |||||||| | ||||| | ||||||||| | ||||| | ||||| || || |||||| ||||||||| || | |
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| T |
42060087 |
taaacatagaaattgaagaagattccaactactccccatgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtggca |
42059988 |
T |
|
| Q |
115 |
tgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacatgggaactggtgcgattagaccgataaggaaaaaccaattca |
210 |
Q |
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| T |
42059987 |
tgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattca |
42059892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 42083964 - 42083769
Alignment:
| Q |
15 |
taaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacagatctcacaggtgggatgtcagatgcacctgcaatgataataggaa |
114 |
Q |
| |
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||||||||||||||||| || |||||||||| ||||| | ||||||||| | || || | ||||| || || |||||| |||| |||| || | |
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| T |
42083964 |
taaacatagaaattgaagaagattccaacaactccccatgaaatataattgattgacctagctggtggtataccactagcacctccaattataagtggca |
42083865 |
T |
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| Q |
115 |
tgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacatgggaactggtgcgattagaccgataaggaaaaaccaattca |
210 |
Q |
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| T |
42083864 |
tgttgatgagttcaatccacttgtggttcgggtatttgcgagctagaaaccacaccggaacaggcgcaagtagaccgatgaggaaaaaccaattca |
42083769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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