View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9978_low_16 (Length: 236)
Name: NF9978_low_16
Description: NF9978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9978_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8403648 - 8403427
Alignment:
| Q |
1 |
agcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatttctt |
100 |
Q |
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| T |
8403648 |
agcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttgatttctt |
8403549 |
T |
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| Q |
101 |
gtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgttagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403548 |
gtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgttagag |
8403449 |
T |
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| Q |
201 |
aattgtataatgtactcccatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
8403448 |
aattgtataatgtactcccatt |
8403427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 8429500 - 8429362
Alignment:
| Q |
4 |
ttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatttcttgtt |
103 |
Q |
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||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||| |
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| T |
8429500 |
ttgcctcgaaatctgctctctatcggatggaaggacgtgagatagatgaattcgccaacaaactcttctgaaaacaacatttt--------ttttttgtt |
8429409 |
T |
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| Q |
104 |
tgattcattctttacatatagattctttcgattattttgaaaataaa |
150 |
Q |
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||||||||||||| |||| |||||||| ||||||||||||||||| |
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| T |
8429408 |
tgattcattcttttcatacgaattctttcaattattttgaaaataaa |
8429362 |
T |
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