View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9978_low_3 (Length: 305)
Name: NF9978_low_3
Description: NF9978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9978_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 68 - 300
Target Start/End: Complemental strand, 28031644 - 28031410
Alignment:
| Q |
68 |
tatttacaaaatcgtaaatctacaagtgataagccttttacatatgtgacttctaagacaacaagnnnnnnnnnn--gcatgcataacgaagctcaatta |
165 |
Q |
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| T |
28031644 |
tatttacaaaatcgtaaatttacaagtgataagccttttacatatgtgacttctaagacaacaagaagaagaaaaaagcatgcataacgaagctcaatta |
28031545 |
T |
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| Q |
166 |
tacaatattctctcaaaggttagaaaatacttaataaaattccaagtaatatttactaaaactatcaagtttaataaaattacaaatatgaaaacaaaga |
265 |
Q |
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| T |
28031544 |
tacaatattctctcaaaggttagaaaatacttaataaaattccaagtaatatttactaaaactatcaagtttaataaaattacaaatatgaaaacaaaga |
28031445 |
T |
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| Q |
266 |
tatatttatgagaacgataaaatgccaagttaagt |
300 |
Q |
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| T |
28031444 |
tatatttatgagaacgataaaatgccaagttaagt |
28031410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28032108 - 28032036
Alignment:
| Q |
1 |
aagcacaaaaatgttagagaaactactaatagaatgtaccgatgaggaggacacgacaacttttatatattta |
73 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28032108 |
aagcataaaaatgttagagaaactactaatagaatgtaccgacgaggaggacacgacaacttttatatattta |
28032036 |
T |
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