View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9978_low_6 (Length: 281)
Name: NF9978_low_6
Description: NF9978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9978_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 19911929 - 19912209
Alignment:
| Q |
1 |
tggaatatgaatcgttgatgtccaagtagagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaaatgaaac |
100 |
Q |
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| T |
19911929 |
tggaatatgaatcgttgatgtccaagcagagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaaatgaaac |
19912028 |
T |
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| Q |
101 |
tgtgagctaactatttgagaaccatagtctttcctcgacaatgtaagaggacaatacacatatgtcatctcatctaaacactagcattttgatttctcat |
200 |
Q |
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| T |
19912029 |
tgtgagctaactatttgagaaccatagtctttcctcgacaatgtaagaggacaatacacatatgtcatctcatctaaacactagcattttgatttctcat |
19912128 |
T |
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| Q |
201 |
agaccaatctatactaacataatttttcattaaaaacaaaacaatgtaatcgaaaagatggtgttattacaataatatgtt |
281 |
Q |
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| T |
19912129 |
agaccaatctatactaacataatttttcattaaaaacaaaacaatgtaatcgaaaagatggtgttattacaataatatgtt |
19912209 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 29404868 - 29404786
Alignment:
| Q |
16 |
tgatgtccaagtagagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaaatgaa |
98 |
Q |
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||||||||||| |||||||| || || || |||| |||||| || || |||||||||||||||||| |||| |||||||||| |
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| T |
29404868 |
tgatgtccaagcagagccagcacgctttagccgaagcttgtctttaaaggctttccaagatcttccatatcaatgaaaatgaa |
29404786 |
T |
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