View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9979_high_7 (Length: 304)

Name: NF9979_high_7
Description: NF9979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9979_high_7
NF9979_high_7
[»] chr3 (1 HSPs)
chr3 (18-299)||(54535614-54535911)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 54535614 - 54535911
Alignment:
Q  18 cctagtttgaattttgaagaatcaaaattgaagtattatgtgtaagtgtttagatatatcaata------cagacatttaaacaaagggggacacttggg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| ||||||||||||    
T  54535614 cctagtttgaattttgaagaatcaaaattgaagtattatgtgtaagtgtttagatatatcaatatcaatacagacatttaaacaaagtgggacacttggg 54535713  T
Q  112 tcttcaaactt----------gacatgtagttagatcatagtaattgactacatataatttttgttttgagtgatgctatattatcaagcgaatgagtaa 201  Q
    |||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54535714 tcttcaaactttcagtatcatgacatgtagttagatcatagtaattgactacatataatttttgttttgagtgatgctatattatcaagcgaatgagtaa 54535813  T
Q  202 ttcgagagagacttgctatgtgtacagcgaagcatgacatggcaaaataattttgtccacgttttaattccagatttatagaaaatcacgtaggatct 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54535814 ttcgagagagacttgctatgtgtacagcgaagcatgacatggcaaaataattttgtccacgttttaattccagatttatagaaaatcacgtaggatct 54535911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University